View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_low_11 (Length: 388)
Name: NF18753_low_11
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 182 - 372
Target Start/End: Complemental strand, 5679258 - 5679068
Alignment:
| Q |
182 |
ctaatagtttgagagactctcttgctttcattttccaaaaaagaatgattgaagtaataatgactcttagttcccacttacccccttaaaatataaaacc |
281 |
Q |
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| T |
5679258 |
ctaatagtttgagagaccctcttgctttcattttccaaaaaagaatgattgaagtaataatgactcttagttcccacttacccccttaaaatataaaacc |
5679159 |
T |
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| Q |
282 |
tttggaaaggaaggggcgtacttggtagaaatgttgaaccaaagccactctcaagggccacacaatggaaggtttttctagaggcaatatg |
372 |
Q |
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| T |
5679158 |
tttggaaaggaaggggcgtacttggtagaaatgttgaaccaaagccactctcaagggccacacaatggaaggtttttctagaggcaatatg |
5679068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 182 - 372
Target Start/End: Complemental strand, 5704310 - 5704120
Alignment:
| Q |
182 |
ctaatagtttgagagactctcttgctttcattttccaaaaaagaatgattgaagtaataatgactcttagttcccacttacccccttaaaatataaaacc |
281 |
Q |
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| T |
5704310 |
ctaatagtttgagagaccctcttgctttcattttccaaaaaagaatgattgaagtaataatgactcttagttcccacttacccccttaaaatataaaacc |
5704211 |
T |
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| Q |
282 |
tttggaaaggaaggggcgtacttggtagaaatgttgaaccaaagccactctcaagggccacacaatggaaggtttttctagaggcaatatg |
372 |
Q |
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| T |
5704210 |
tttggaaaggaaggggcgtacttggtagaaatgttgaaccaaagccactctcaagggccacacaatggaaggtttttctagaggcaatatg |
5704120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 5679451 - 5679284
Alignment:
| Q |
18 |
aatgaaattcctcactaatcggtatgaaaaaatgttaattttcaagtagtgtttgaaatctttccgcaattctagcagttaaatggttgttgaatctgag |
117 |
Q |
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| T |
5679451 |
aatgaaattcctcactaatcggtatgaaaaaatgttaattttctagtagtgtttgtaatctttccgcaattctagtagttaaatggtcgttgaatctgag |
5679352 |
T |
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| Q |
118 |
tgcaacttgcacaattctactgcatcgtttgcatttagattcaacgactctgaagtgtaataatctaa |
185 |
Q |
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| T |
5679351 |
tgcaacttgcacaattcaactgcatcgcttgcatttagattcaacgactctgaagtgtaataatctaa |
5679284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 5704503 - 5704336
Alignment:
| Q |
18 |
aatgaaattcctcactaatcggtatgaaaaaatgttaattttcaagtagtgtttgaaatctttccgcaattctagcagttaaatggttgttgaatctgag |
117 |
Q |
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| T |
5704503 |
aatgaaattcctcactaatcggtatgaaaaaatgttaattttctagtagtgtttgtaatctttccgcaattctagtagttaaatggtcgttgaatctgag |
5704404 |
T |
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| Q |
118 |
tgcaacttgcacaattctactgcatcgtttgcatttagattcaacgactctgaagtgtaataatctaa |
185 |
Q |
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| T |
5704403 |
tgcaacttgcacaattcaactgcatcgcttgcatttagattcaacgactctgaagtgtaataatctaa |
5704336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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