View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18753_low_13 (Length: 363)

Name: NF18753_low_13
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18753_low_13
NF18753_low_13
[»] chr7 (6 HSPs)
chr7 (19-363)||(6333081-6333425)
chr7 (19-355)||(6325612-6325948)
chr7 (19-305)||(6346256-6346542)
chr7 (30-263)||(6242743-6242966)
chr7 (19-302)||(6219568-6219854)
chr7 (116-263)||(6219151-6219298)
[»] scaffold2079 (1 HSPs)
scaffold2079 (65-185)||(986-1106)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 6333425 - 6333081
Alignment:
Q  19 ttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6333425 ttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaagagtttctttccttccaagatgatcattcttttacttg 6333326  T
Q  119 gaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttattcgggtttgttgatcttcatctttgctttgatgtgctataa 218  Q
    |||||||||||||| |||||||||| ||| | ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6333325 gaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttggatttatttgggtttgttgatcttcatctttgctttgatgtgctataa 6333226  T
Q  219 gagtaaaaacgaactctatcaattgattccagaaaggatcaagaaagtgtctgagggtcagactcagagtggcgattcggagttacctgcagttaggtcg 318  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6333225 gagtaaaaatgaaatctatcaattgattccagaaaggatcaagaaagtgtttgagggtcagactcagagtggcgattcggagttacctgcagttaggtcg 6333126  T
Q  319 attcctatctagagaaattaatttcattttgttgtatgagtttct 363  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  6333125 attcctatctagagaaattaatttcattttgttgtatgagattct 6333081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 6325948 - 6325612
Alignment:
Q  19 ttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttg 118  Q
    |||||||||||||||||||||||||||||||||||||| ||| || | ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  6325948 ttcatggtttctctttactacctggctttggtgcttgtaacaatgatacatattcacatcaagagattcattccttccaagatgatcattcttttacttg 6325849  T
Q  119 gaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttattcgggtttgttgatcttcatctttgctttgatgtgctataa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||| |||||||||||||||||||||||    
T  6325848 gaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggatttatttgggtttttggatctttatctttgctttgatgtgctataa 6325749  T
Q  219 gagtaaaaacgaactctatcaattgattccagaaaggatcaagaaagtgtctgagggtcagactcagagtggcgattcggagttacctgcagttaggtcg 318  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||| | ||| |||||||   ||| |||||||||| ||||||||||    
T  6325748 gagtaaaaatgaactctatcaatggattccagaaaggatcaagaaagtttttgagggtaaaactgagagtggtatttccgagttacctgtagttaggtcg 6325649  T
Q  319 attcctatctagagaaattaatttcattttgttgtat 355  Q
     ||||||| || |||||||||||||| | ||||||||    
T  6325648 cttcctatataaagaaattaatttcagtgtgttgtat 6325612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 6346542 - 6346256
Alignment:
Q  19 ttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttg 118  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| || | || |||||||||||||  |||||||| | || |||| | ||| |||||||||    
T  6346542 ttcatggttgctctttactacttggttttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggttattgttttacttg 6346443  T
Q  119 gaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttattcgggtttgttgatcttcatctttgctttgatgtgctataa 218  Q
    |||||||||||||| || ||||||| ||| | ||||| || |||||||||||||||| || ||| |||| ||||||  |||||||||||||||||||| |    
T  6346442 gaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttgggcttgtggatcttactctttgctttgatgtgctatga 6346343  T
Q  219 gagtaaaaacgaactctatcaattgattccagaaaggatcaagaaagtgtctgagggtcagactcagagtggcgattcggagttacc 305  Q
    || |||||| |||||||||||| |||||||| ||||||||||||| || | ||||||| ||||||| |||||| ||||  |||||||    
T  6346342 gaataaaaaagaactctatcaaatgattccacaaaggatcaagaatgtttttgagggtgagactcaaagtggcaattcaaagttacc 6346256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 6242743 - 6242966
Alignment:
Q  30 tctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttggaagtgttgtt 129  Q
    |||||||||||| |||||||||||||||||| |||| || ||||||||||| ||||||||||| | || |||| | ||||||||||||||||||||| ||    
T  6242743 tctttactacctagctttggtgcttgtgacaatgttacagcttcacatcaatagtttccttccatacatgatggtaattcttttacttggaagtgttatt 6242842  T
Q  130 tcaattttagctttaatggttatttcgccgacaattgcttggatttattcgggtttgttgatcttcatctttgctttgatgtgctataagagtaaaaacg 229  Q
    |||||||||||          |||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||| |  ||| |    
T  6242843 tcaattttagc----------atttcgccgacaattgcttggatttatttgggtttgtggatcttaatctttgctttgatgttctataagaatcgaaaag 6242932  T
Q  230 aactctatcaattgattccagaaaggatcaagaa 263  Q
    |||||| ||||| ||||||| |||||||||||||    
T  6242933 aactctttcaatggattccaaaaaggatcaagaa 6242966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 6219568 - 6219854
Alignment:
Q  19 ttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttg 118  Q
    ||||||||| |||||| || | ||| |||||||||| | ||| |||| ||  ||||||||||||| |||||||| | || |||| | ||| |||||||||    
T  6219568 ttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccattcatgatggttattgttttacttg 6219667  T
Q  119 gaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttattcgggtttgttgatcttcatctttgctttgatgtgctataa 218  Q
    |||||||||||||| || ||||||| ||| | ||||| || |||||||||||||||| || | | |||| ||||||  ||||| |||||||||||||| |    
T  6219668 gaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttgtgcttgtggatcttactcttttctttgatgtgctatga 6219767  T
Q  219 gagtaaaaacgaactctatca---attgattccagaaaggatcaagaaagtgtctgagggtcagactcagagtggcgattcggagtt 302  Q
    || |  ||| || ||||||||   ||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||| ||||||    
T  6219768 gaatcgaaaagagctctatcaaatattgattccagaaaggatcaagaaagtttttgagggttagactcatagtggcgattaggagtt 6219854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 6219151 - 6219298
Alignment:
Q  116 ttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttattcgggtttgttgatcttcatctttgctttgatgtgcta 215  Q
    |||||||||||||||  ||||||||||| |||  |||||| || || |||||||||||| |||  ||  |||||||||| || ||| |||||||| ||||    
T  6219151 ttggaagtgttgtttttattttagctttgatgaatatttcccctaccattgcttggattgatttcgggctgttgatcttaatattttctttgatgggcta 6219250  T
Q  216 taagagtaaaaacgaactctatcaattgattccagaaaggatcaagaa 263  Q
    ||| | |  ||| |||||||||||| |||||||  |||||||||||||    
T  6219251 taaaaatcgaaaagaactctatcaaatgattccccaaaggatcaagaa 6219298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2079 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 986 - 1106
Alignment:
Q  65 tgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaat 164  Q
    |||| ||||||||||| |||||||| || | || |||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  986 tgcagcttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaat 1085  T
Q  165 tgcttggatttattcgggttt 185  Q
    |||||||||||||| ||||||    
T  1086 tgcttggatttatttgggttt 1106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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