View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_low_16 (Length: 337)
Name: NF18753_low_16
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 8337972 - 8337641
Alignment:
| Q |
1 |
gttgtctaattccaatcaaatcaacttacactatttacacatgcctggtactatatcctttgtttattactaacatcataatctactcttcacatcttac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8337972 |
gttgtctaattccaatcaaatcaacttacactatttacacatgcctggtactatatcctttgtttattactaacatcataatctactcttcacattttac |
8337873 |
T |
|
| Q |
101 |
aaccatttgttccctctctcaaacactggtgagaaactgcttttcattttcacttcttccctctttatcattcctaccctctttcatttactggtaaatg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
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| T |
8337872 |
aaccattcgttccctctctcaaacactggtgagaaactgcttttcattttcacttcttctctctttatcattcctaccctctttcatttactgctaaacg |
8337773 |
T |
|
| Q |
201 |
tcattaactaatgcttttaaacatcacaaaagtaagaagatttatgttcttccattttttcagtcataacttattgtttcttaaattcacatggtttaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
8337772 |
tcattaactaatgcttttaaacatcacaaaagtaagaagatttatgttcttccattttttcagtcataacttattgtttcttaaatttacatggtttcca |
8337673 |
T |
|
| Q |
301 |
gatctgttttttccaacttgtgatgatgtcca |
332 |
Q |
| |
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|||||||||||||||| ||||| | ||||||| |
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| T |
8337672 |
gatctgttttttccaatttgtgttcatgtcca |
8337641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 10235252 - 10234920
Alignment:
| Q |
1 |
gttgtctaattccaatcaaatcaacttacactatttacacatgcctggtactatatcctttgtttattactaacatcataatctactcttcacatcttac |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10235252 |
gttgtctaattccaatgaaatcaacttacactatttacacatatctggtactatatcctttgtttattactaacatcataatctactcttcacattttac |
10235153 |
T |
|
| Q |
101 |
aaccatttgttccctctctcaaacactggtgagaaactgcttttcattttcacttcttccctctttatcattcctaccctctttcatttactggtaaatg |
200 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10235152 |
aaccatccgttccctctctcaaacaccggtgagaaactgcttttcattttcacttcttccctctttatcattcctaccctctttcatttactggtaaaca |
10235053 |
T |
|
| Q |
201 |
tcattaactaatgcttttaaacatcacaaaagtaagaagatttatgttcttccattttttcagtcataacttattgtttctt-aaattcacatggtttac |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |
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| T |
10235052 |
tcattaactaatgcttttaaacatcacaaaagtaagaagatttatgttcttccattttttcagtcataacttattgtttcttaaaaatcacatggtttcc |
10234953 |
T |
|
| Q |
300 |
agatctgttttttccaacttgtgatgatgtcca |
332 |
Q |
| |
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||||||||||||||||||||||| | ||||||| |
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|
| T |
10234952 |
agatctgttttttccaacttgtgtttatgtcca |
10234920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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