View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18753_low_18 (Length: 302)

Name: NF18753_low_18
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18753_low_18
NF18753_low_18
[»] chr7 (1 HSPs)
chr7 (31-287)||(8337989-8338247)
[»] chr8 (1 HSPs)
chr8 (31-287)||(10235269-10235528)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 31 - 287
Target Start/End: Complemental strand, 8338247 - 8337989
Alignment:
Q  31 ttaatataagaaaggaagatcctgtggaaaacccacttatgccctaagctatttttctgccacgtccttcattaatgggtaaaagttgtctaaataannn 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||       
T  8338247 ttaatataagaaaggaagatcctgtggaaaacccacttatgccctaggctctttttctgccacgtccttcattaatggataaaagttgtctaaataattt 8338148  T
Q  131 nnnnn--aactaacttaccattagtttggaccaattgtgtaatgtaactttattagttaccattagttcaaacttaacactgatatatctaactttaact 228  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8338147 tttttttaactaacttaccattagtttggaccaattgtgtaatgtaactttattagttaccattagttcaaacttaacactgatatatctaactttaact 8338048  T
Q  229 ggttacaacaactgaactttattgacaactatttggtgggaaaatatatcaatacacat 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8338047 ggttacaacaactgaactttattgacaactatttggtgggaaaatatatcaatacacat 8337989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 31 - 287
Target Start/End: Complemental strand, 10235528 - 10235269
Alignment:
Q  31 ttaatataagaaaggaagatcctgtggaaaacccacttatgccctaagctatttttctgccacgtccttcattaatgggtaaaagttgtctaaataannn 130  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         
T  10235528 ttaatataagaaaggaagatcatgtggaaaacccacttatgccctaagctctttttctgccacgtccttcattaatgggtaaaagttgtctaaatttttt 10235429  T
Q  131 nnnnn----aactaacttaccattagtttggaccaattgtgtaatgtaactttattagttaccattagttcaaacttaacactgatatatctaactttaa 226  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10235428 tttttttttaactaacttaccattagtttggaccaattgtgtaatgtaactttattagttaccattagttcaaacttaacact-atatatctaactttaa 10235330  T
Q  227 ctggttacaacaactgaactttattgacaactatttggtgggaaaatatatcaatacacat 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10235329 ttggttacaacaactgaactttattgacaactatttggtgggaaaatatatcaatacacat 10235269  T

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