View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18753_low_20 (Length: 254)

Name: NF18753_low_20
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18753_low_20
NF18753_low_20
[»] chr3 (7 HSPs)
chr3 (13-236)||(18020286-18020509)
chr3 (199-235)||(13874871-13874907)
chr3 (53-101)||(22102420-22102468)
chr3 (53-101)||(22177368-22177416)
chr3 (53-101)||(35380331-35380379)
chr3 (53-101)||(45644121-45644169)
chr3 (53-101)||(45885797-45885845)
[»] chr2 (3 HSPs)
chr2 (53-101)||(36341674-36341722)
chr2 (53-101)||(24100671-24100719)
chr2 (53-101)||(33676750-33676798)
[»] chr4 (2 HSPs)
chr4 (25-101)||(1397183-1397259)
chr4 (199-236)||(5635211-5635248)
[»] chr8 (1 HSPs)
chr8 (199-236)||(17110326-17110363)
[»] chr7 (2 HSPs)
chr7 (60-101)||(9412664-9412705)
chr7 (53-101)||(36609860-36609908)
[»] chr6 (1 HSPs)
chr6 (200-236)||(26528590-26528626)
[»] chr5 (1 HSPs)
chr5 (53-101)||(17210567-17210615)
[»] chr1 (1 HSPs)
chr1 (53-101)||(45943291-45943339)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 18020509 - 18020286
Alignment:
Q  13 aatataccataaaaaatataatccaaattcttannnnnnnaatgaccctaacgacaatctttattatggaaaagattgtttaagggtatttcttataatt 112  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020509 aatataccataaaaaatataatccaaattcttatttttttaatgaccctaacgacaatctttattatggaaaagattgtttaagggtatttcttataatt 18020410  T
Q  113 tgggttataaattaaaaaacatgggataaataatttcgttgataaatagnnnnnnngggtgtcgtgagtataactttgttagtacagacaatgcattatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||| |||||||||||||||    
T  18020409 tgggttataaattaaaaaacatgggataaataatttcgttgataaatagaaaaaaagggtgtcgtgagtataactttattagtatagacaatgcattatt 18020310  T
Q  213 ttatgcaggggtcggtgttcaaac 236  Q
    ||||||||||||||||||||||||    
T  18020309 ttatgcaggggtcggtgttcaaac 18020286  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 13874907 - 13874871
Alignment:
Q  199 gacaatgcattattttatgcaggggtcggtgttcaaa 235  Q
    |||||||||||||| |||||||||||||| |||||||    
T  13874907 gacaatgcattattatatgcaggggtcggggttcaaa 13874871  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 22102468 - 22102420
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| | ||| ||||||||||||||||||||  ||||||||||||||    
T  22102468 aatgacaccaacaacaatctttattatggaaaaagttgtttaagggtat 22102420  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 22177416 - 22177368
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| | ||| ||||||||||||||||||||  ||||||||||||||    
T  22177416 aatgacaccaacaacaatctttattatggaaaaagttgtttaagggtat 22177368  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 35380379 - 35380331
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| ||||| |||||||||| ||| ||||| |||||||||||||||    
T  35380379 aatgacactaacaacaatctttactatagaaaaaattgtttaagggtat 35380331  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 45644169 - 45644121
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| | |||||||||||||||||| |||||  ||||||||||||||    
T  45644169 aatgacaccaacgacaatctttattatagaaaaagttgtttaagggtat 45644121  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 45885845 - 45885797
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| | ||| |||||||||||||| ||||| |||||||||||||||    
T  45885845 aatgacaccaacaacaatctttattatagaaaaaattgtttaagggtat 45885797  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 36341674 - 36341722
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  36341674 aatgacactaacgacaatctttattatagaaaaaattgtttaagggtat 36341722  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 24100719 - 24100671
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| | ||| |||||||||||||| ||||| |||||||||||||||    
T  24100719 aatgacaccaacaacaatctttattatagaaaatattgtttaagggtat 24100671  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 33676750 - 33676798
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| | ||| |||||||||||||| ||||| |||||||||||||||    
T  33676750 aatgacaccaacaacaatctttattatagaaaaaattgtttaagggtat 33676798  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 1397259 - 1397183
Alignment:
Q  25 aaaatataatccaaattcttannnnnnnaatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    ||||||||||| |||||||||       |||||| | |||||||||||||||||| |||||  ||||||||||||||    
T  1397259 aaaatataatctaaattcttatttttttaatgacaccaacgacaatctttattattgaaaaacttgtttaagggtat 1397183  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 5635211 - 5635248
Alignment:
Q  199 gacaatgcattattttatgcaggggtcggtgttcaaac 236  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  5635211 gacaatgcattattatatgcaggggtcggggttcaaac 5635248  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 17110326 - 17110363
Alignment:
Q  199 gacaatgcattattttatgcaggggtcggtgttcaaac 236  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  17110326 gacaatgcattattatatgcaggggtcggggttcaaac 17110363  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 9412705 - 9412664
Alignment:
Q  60 ctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    ||||| |||||||||||||| ||||| |||||||||||||||    
T  9412705 ctaacaacaatctttattatagaaaaaattgtttaagggtat 9412664  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 36609860 - 36609908
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| | ||| |||||||||||||| ||||| |||||||||||||||    
T  36609860 aatgacaccaacaacaatctttattatagaaaaaattgtttaagggtat 36609908  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 26528590 - 26528626
Alignment:
Q  200 acaatgcattattttatgcaggggtcggtgttcaaac 236  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  26528590 acaatgcattattatatgcaggggtcggggttcaaac 26528626  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 17210615 - 17210567
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| | ||| |||||||||||||| ||||| |||||||||||||||    
T  17210615 aatgacaccaacaacaatctttattatagaaaaaattgtttaagggtat 17210567  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 45943339 - 45943291
Alignment:
Q  53 aatgaccctaacgacaatctttattatggaaaagattgtttaagggtat 101  Q
    |||||| ||||| |||||||||||||| ||||| ||||||| |||||||    
T  45943339 aatgacactaacaacaatctttattatagaaaaaattgtttgagggtat 45943291  T

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