View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_low_24 (Length: 234)
Name: NF18753_low_24
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 6346183 - 6346381
Alignment:
| Q |
16 |
ataaaaatacaacatataagcaagatacaca--gaaattttacttaatcaaatgcaaacaatttctctagactggtaactttgaattgccactttgagtc |
113 |
Q |
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| T |
6346183 |
ataaaaatacaacatataagcaagatacacatagaaattttacttaatcaaatgcaaataatttctctagactggtaactttgaattgccactttgagtc |
6346282 |
T |
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| Q |
114 |
tcaccctcgaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagccc |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6346283 |
tcaccctcaaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagccc |
6346381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 6219843 - 6219731
Alignment:
| Q |
101 |
gccactttgagtctcaccctcgaaaacattcttgatcctttgtggaatca---tttgatagagttcttttttattctcatagcacatcaaagcaaagagt |
197 |
Q |
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| T |
6219843 |
gccactatgagtctaaccctcaaaaactttcttgatcctttctggaatcaatatttgatagagctcttttcgattctcatagcacatcaaagaaaagagt |
6219744 |
T |
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| Q |
198 |
aagatccacaagc |
210 |
Q |
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| T |
6219743 |
aagatccacaagc |
6219731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 6333139 - 6333260
Alignment:
| Q |
87 |
ggtaactttgaattgccactttgagtctcaccctcgaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatca |
186 |
Q |
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| T |
6333139 |
ggtaactccgaatcgccactctgagtctgaccctcaaacactttcttgatcctttctggaatcaattgatagatttcatttttactcttatagcacatca |
6333238 |
T |
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| Q |
187 |
aagcaaagagtaagatccacaa |
208 |
Q |
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| T |
6333239 |
aagcaaagatgaagatcaacaa |
6333260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 6325691 - 6325780
Alignment:
| Q |
116 |
accctcgaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatcca |
205 |
Q |
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| T |
6325691 |
accctcaaaaactttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatcca |
6325780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 6242970 - 6242887
Alignment:
| Q |
125 |
aacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaa |
208 |
Q |
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| T |
6242970 |
aacattcttgatcctttttggaatccattgaaagagttcttttcgattcttatagaacatcaaagcaaagattaagatccacaa |
6242887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 6219299 - 6219224
Alignment:
| Q |
128 |
attcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatc |
203 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||| | ||||| |||||||| ||| | ||||||| |
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| T |
6219299 |
attcttgatcctttggggaatcatttgatagagttcttttcgatttttatagcccatcaaagaaaatattaagatc |
6219224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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