View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_low_25 (Length: 228)
Name: NF18753_low_25
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_low_25 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5679677 - 5679451
Alignment:
| Q |
1 |
ggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatagatgctaggagtatgtgtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5679677 |
ggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatggatgctaggagtatgtgtttc |
5679578 |
T |
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| Q |
101 |
cttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaacaatgctatgttgagttgtgctatataaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5679577 |
cttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaac-atgctatgttgagttgtgctatataaga |
5679479 |
T |
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| Q |
201 |
tgttgaaatagtggtagggacaaagtta |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5679478 |
tgttgaaatagtggtagggacaaagtta |
5679451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5704729 - 5704503
Alignment:
| Q |
1 |
ggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatagatgctaggagtatgtgtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5704729 |
ggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatggatgctaggagtatgtgtttc |
5704630 |
T |
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| Q |
101 |
cttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaacaatgctatgttgagttgtgctatataaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5704629 |
cttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaac-atgctatgttgagttgtgctatataaga |
5704531 |
T |
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| Q |
201 |
tgttgaaatagtggtagggacaaagtta |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5704530 |
tgttgaaatagtggtagggacaaagtta |
5704503 |
T |
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