View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_low_3 (Length: 523)
Name: NF18753_low_3
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 215 - 506
Target Start/End: Original strand, 49726317 - 49726609
Alignment:
| Q |
215 |
ctattatgaccttgccaaa-cacacactcagtcaaaaatggctgcatagcaagaccattctctgtttctctgcactgcttccgtcttatggcatatattt |
313 |
Q |
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| T |
49726317 |
ctattatgaccttgccaaaacacacactcagtcaaaaatggctgcatagcaagaccattctctgtttctctccactgcttccgtcttatggcatatattt |
49726416 |
T |
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| Q |
314 |
agtatatcatatcaactgaaacattatttattactcactatagattacagaaccacacaaattatttatcatgttctcacaacacctcttcttgttttca |
413 |
Q |
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| T |
49726417 |
agtatatcatatcaattgaaacattatttattactcactatagattacagaaccacacaaattatttatcatgttctcacaacacctcttcttgttttca |
49726516 |
T |
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| Q |
414 |
tgcctccttatacaacaactgctactatcatcatgtatctgtccatcttcaattacctgtggatttctcggagaaattgaattcccttttaca |
506 |
Q |
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| T |
49726517 |
tgcctccttataaaacaactgctactatcatcatgtatctgtccatcttcaattacctgtggatttctcggagaaattgaattcccttttaca |
49726609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 49683137 - 49683234
Alignment:
| Q |
1 |
ataaaacctcataatatattacttcatgaggatttctgaccacaaatttcatattttggacttgctaaaatatgtccaagaaaagaaagtatagtatc |
98 |
Q |
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| T |
49683137 |
ataaaacctcataatatattacttgacgatgatttgtgtccaaaaatttcagattttggacttgctaaaatatgtccaagaaaagaaagcattgtatc |
49683234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 49714391 - 49714493
Alignment:
| Q |
4 |
aaacctcataatatattacttcatgaggatttctgaccacaaatttcatattttggacttgctaaaatatgtccaagaaaagaaagtatagtatccattt |
103 |
Q |
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| T |
49714391 |
aaacctcataatatattacttgatgaagatttctgtcctaaaatttcagatttcggacttgctaaagtatgtccaagaaaagaaagcattgtatccatat |
49714490 |
T |
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| Q |
104 |
ttg |
106 |
Q |
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||| |
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| T |
49714491 |
ttg |
49714493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 49688043 - 49688148
Alignment:
| Q |
1 |
ataaaacctcataatatattacttcatgaggatttctgaccacaaatttcatattttggacttgctaaaatatgtccaagaaaagaaagtatagtatcca |
100 |
Q |
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| T |
49688043 |
ataaaacctcataatatattacttgatgagaatttctgcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgtatcca |
49688142 |
T |
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| Q |
101 |
tttttg |
106 |
Q |
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| |||| |
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| T |
49688143 |
tatttg |
49688148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 49215409 - 49215500
Alignment:
| Q |
1 |
ataaaacctcataatatattacttcatgaggatttctgaccacaaatttcatattttggacttgctaaaatatgtccaagaaaagaaagtat |
92 |
Q |
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| T |
49215409 |
ataagacctcataatatattactagctgatgatttttgtccgaaaatttcagattttggacttgctaaaatatgcccaagaaaagaaagtat |
49215500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 49710746 - 49710844
Alignment:
| Q |
1 |
ataaaacctcataatatattacttcatgagga-tttctgaccacaaatttcatattttggacttgctaaaatatgtccaagaaaagaaagtatagtatc |
98 |
Q |
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| T |
49710746 |
ataaaacctcataatatattactagatgattaatttttgtccaaaaatttcagattttggacttgctaaaatatgtctaagaaaagaaagcattgtatc |
49710844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 49726275 - 49726329
Alignment:
| Q |
111 |
atatatacactaagatagtccactgttgactgttgacttgtcctattatgacctt |
165 |
Q |
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| T |
49726275 |
atatatatactaagatagtccactgttgactgttgacttttcctattatgacctt |
49726329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 49728637 - 49728676
Alignment:
| Q |
53 |
attttggacttgctaaaatatgtccaagaaaagaaagtat |
92 |
Q |
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| T |
49728637 |
attttggacttgcaaaagtatgtccaagaaaagaaagtat |
49728676 |
T |
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