View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18754_high_2 (Length: 329)

Name: NF18754_high_2
Description: NF18754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18754_high_2
NF18754_high_2
[»] chr6 (6 HSPs)
chr6 (5-316)||(24465122-24465432)
chr6 (187-247)||(18019477-18019537)
chr6 (187-243)||(21995553-21995609)
chr6 (187-247)||(22859537-22859597)
chr6 (187-247)||(27507996-27508056)
chr6 (187-247)||(27525210-27525270)
[»] chr4 (12 HSPs)
chr4 (187-247)||(9488142-9488202)
chr4 (187-247)||(30040137-30040197)
chr4 (187-247)||(4546657-4546717)
chr4 (187-247)||(26532206-26532266)
chr4 (187-247)||(28917423-28917483)
chr4 (188-247)||(9538554-9538613)
chr4 (187-247)||(2677606-2677666)
chr4 (187-247)||(10677049-10677109)
chr4 (187-247)||(10890689-10890749)
chr4 (191-247)||(15462099-15462155)
chr4 (187-247)||(15815614-15815674)
chr4 (187-247)||(34976146-34976206)
[»] chr8 (9 HSPs)
chr8 (187-247)||(18835940-18836000)
chr8 (187-247)||(8370901-8370961)
chr8 (187-247)||(25611789-25611849)
chr8 (187-247)||(26241079-26241139)
chr8 (186-247)||(21969926-21969987)
chr8 (187-247)||(27007166-27007226)
chr8 (187-247)||(27014309-27014369)
chr8 (187-247)||(27880136-27880196)
chr8 (187-247)||(28020317-28020377)
[»] chr7 (9 HSPs)
chr7 (187-247)||(47166507-47166567)
chr7 (187-247)||(8465593-8465653)
chr7 (187-247)||(18258771-18258831)
chr7 (187-247)||(18400697-18400757)
chr7 (187-247)||(18407681-18407741)
chr7 (187-247)||(19231482-19231542)
chr7 (187-247)||(34129168-34129228)
chr7 (187-247)||(41680616-41680676)
chr7 (187-247)||(48808145-48808205)
[»] scaffold0389 (1 HSPs)
scaffold0389 (187-247)||(756-816)
[»] scaffold0112 (1 HSPs)
scaffold0112 (187-247)||(777-837)
[»] chr5 (8 HSPs)
chr5 (187-247)||(20941621-20941681)
chr5 (187-247)||(22941845-22941905)
chr5 (187-247)||(25805033-25805093)
chr5 (187-247)||(32492-32552)
chr5 (187-247)||(5098243-5098303)
chr5 (187-247)||(23546515-23546575)
chr5 (186-242)||(28719234-28719290)
chr5 (187-247)||(31097410-31097470)
[»] chr3 (7 HSPs)
chr3 (187-247)||(15846184-15846244)
chr3 (187-247)||(21034832-21034892)
chr3 (187-247)||(21399386-21399446)
chr3 (186-247)||(25978375-25978436)
chr3 (187-247)||(14147614-14147674)
chr3 (187-247)||(20147203-20147263)
chr3 (187-247)||(26816886-26816946)
[»] chr2 (3 HSPs)
chr2 (187-247)||(24249681-24249741)
chr2 (187-247)||(24763319-24763379)
chr2 (187-247)||(30174970-30175030)
[»] chr1 (10 HSPs)
chr1 (187-247)||(19706087-19706147)
chr1 (187-247)||(28134371-28134431)
chr1 (187-247)||(47667133-47667193)
chr1 (187-245)||(22613086-22613144)
chr1 (187-247)||(9456709-9456769)
chr1 (187-247)||(9460805-9460865)
chr1 (187-247)||(20779294-20779354)
chr1 (187-247)||(22669906-22669966)
chr1 (187-247)||(33283505-33283565)
chr1 (187-247)||(42816638-42816698)
[»] scaffold0111 (1 HSPs)
scaffold0111 (189-247)||(27138-27196)
[»] scaffold0466 (1 HSPs)
scaffold0466 (187-247)||(12597-12657)
[»] scaffold0028 (1 HSPs)
scaffold0028 (187-247)||(120323-120383)


Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 316
Target Start/End: Complemental strand, 24465432 - 24465122
Alignment:
Q  5 attcctaaatgtggattatagtgctttgttgtcttctcaaacattgtatgtaaaaagatgattataaagccaattgataggcaatccacgaatcatggtg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24465432 attcctaaatgtggattatagtgctttgttgtcttctcaaacattgtatgtaaaaagatgattataaagccaattgataggcaatccacgaatcatggtg 24465333  T
Q  105 aatgggatattgaactagacaatgattacatagtctatcccgtgtgttcaataatggcataagggtaaaaggataatatggtattcttgtcactaggata 204  Q
    |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||    
T  24465332 aatgggatattgaactagacaatgattacatagtctattctg-gtgttcaataatggcataagagtaaaaggataatatggcattcttgtcactagggta 24465234  T
Q  205 acaatgatgagttgctagatactacccattgtttataatattattaccaacaaggtcacacacataaggacaaatgaatgagaccttaaataaataagta 304  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24465233 acagtgatgagttgctagatactactcattgtttataatattattaccaacaaggtcacacacataaggacaaatgaatgagacattaaataaataagta 24465134  T
Q  305 aaacttatatat 316  Q
     |||||||||||    
T  24465133 gaacttatatat 24465122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 18019537 - 18019477
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  18019537 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 18019477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 21995553 - 21995609
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataat 243  Q
    |||||||||||| ||||| ||||||||  |||||||||||  | |||||||||||||    
T  21995553 attcttgtcacttggatagcaatgatgtattgctagataccgctcattgtttataat 21995609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 22859597 - 22859537
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  22859597 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 22859537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 27508056 - 27507996
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  |  ||||||||||||||||    
T  27508056 attcttgtcacttgggtagcaatgatgtgttgctagataccgctaattgtttataatatta 27507996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 27525270 - 27525210
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  |  ||||||||||||||||    
T  27525270 attcttgtcacttgggtagcaatgatgtgttgctagataccgctaattgtttataatatta 27525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 9488142 - 9488202
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| ||||| |||||||| ||||||||||||| | |||||||||||||||||    
T  9488142 attcttgtcacttggatagcaatgatgtgttgctagatactgctcattgtttataatatta 9488202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 30040197 - 30040137
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| ||||| |||||||| |||||||||||| || ||||||||||| |||||    
T  30040197 attcttgtcacttggatagcaatgatgtgttgctagataccactcattgtttatagtatta 30040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 4546657 - 4546717
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| ||||| |||||||| ||||||||||||  | ||||||||||| |||||    
T  4546657 attcttgtcacttggatagcaatgatgtgttgctagataccgctcattgtttatagtatta 4546717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 26532206 - 26532266
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  26532206 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 26532266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 28917483 - 28917423
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  28917483 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 28917423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 9538554 - 9538613
Alignment:
Q  188 ttcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    ||||||||||| |||||||| ||||  ||||||||||||  | |||||||||||||||||    
T  9538554 ttcttgtcacttggataacagtgatctgttgctagataccgctcattgtttataatatta 9538613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 2677606 - 2677666
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || | |||||| ||||||||||||  | |||||||||||||||||    
T  2677606 attcttgtcacttgggtagccatgatgtgttgctagataccgctcattgtttataatatta 2677666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 10677109 - 10677049
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| ||||| || ||||| ||||||||||||  | || ||||||||||||||    
T  10677109 attcttgtcacttggatagcagtgatgtgttgctagataccgctcactgtttataatatta 10677049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 10890749 - 10890689
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| ||||| || ||||| ||||||||||||  | || ||||||||||||||    
T  10890749 attcttgtcacttggatagcagtgatgtgttgctagataccgctcactgtttataatatta 10890689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 15462099 - 15462155
Alignment:
Q  191 ttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  15462099 ttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 15462155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 15815614 - 15815674
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  15815614 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 15815674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 34976146 - 34976206
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| |||| |||||||  | |||||||||||||||||    
T  34976146 attcttgtcacttgggtagcaatgatgtgttgttagataccgctcattgtttataatatta 34976206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 18835940 - 18836000
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||||  |||||||||||||||||    
T  18835940 attcttgtcacttgggtagcaatgatgtgttgctagatactagtcattgtttataatatta 18836000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 8370961 - 8370901
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  8370961 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 8370901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 25611789 - 25611849
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  25611789 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 25611849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 26241079 - 26241139
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  26241079 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 26241139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 21969926 - 21969987
Alignment:
Q  186 tattcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    ||||||||||||| ||||| ||||| || ||||||||||||  | || ||||||||||||||    
T  21969926 tattcttgtcacttggatagcaatggtgtgttgctagataccgctcaatgtttataatatta 21969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 27007226 - 27007166
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  27007226 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 27007166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 27014369 - 27014309
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  27014369 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 27014309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 27880196 - 27880136
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  27880196 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 27880136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 28020377 - 28020317
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  28020377 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 28020317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 47166567 - 47166507
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||| | |||||||||||||||||    
T  47166567 attcttgtcacttgggtagcaatgatgtgttgctagatactgctcattgtttataatatta 47166507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 8465593 - 8465653
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  8465593 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 8465653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 18258831 - 18258771
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || ||||||||||| ||||||||||||  | ||||||||||| |||||    
T  18258831 attcttgtcacttgggtaacaatgatgtgttgctagataccgctcattgtttatagtatta 18258771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 18400697 - 18400757
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || | |||||| ||||||||||||  | |||||||||||||||||    
T  18400697 attcttgtcacttgggtagccatgatgtgttgctagataccgctcattgtttataatatta 18400757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 18407681 - 18407741
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || | |||||| ||||||||||||  | |||||||||||||||||    
T  18407681 attcttgtcacttgggtagccatgatgtgttgctagataccgctcattgtttataatatta 18407741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 19231482 - 19231542
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || ||| |||| |||||||||||| || ||||||||||| |||||    
T  19231482 attcttgtcacttgggtagcaaagatgtgttgctagataccactcattgtttatattatta 19231542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 34129168 - 34129228
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| ||||| |||||||| ||||||||||||  | ||||| ||||| |||||    
T  34129168 attcttgtcacttggatagcaatgatgtgttgctagataccgctcattggttatattatta 34129228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 41680676 - 41680616
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||  ||||||||||||  | |||||||||||||||||    
T  41680676 attcttgtcacttgggtagcaatgatatgttgctagataccgctcattgtttataatatta 41680616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 48808205 - 48808145
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  48808205 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 48808145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 756 - 816
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  756 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 777 - 837
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  777 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 20941621 - 20941681
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  20941621 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 20941681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 22941845 - 22941905
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  22941845 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 22941905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 25805093 - 25805033
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  25805093 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 25805033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 32492 - 32552
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  32492 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 32552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 5098243 - 5098303
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | ||||||||||| |||||    
T  5098243 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatagtatta 5098303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 23546515 - 23546575
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  23546515 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 23546575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 28719290 - 28719234
Alignment:
Q  186 tattcttgtcactaggataacaatgatgagttgctagatactacccattgtttataa 242  Q
    ||||||||||||| || || |||||||| ||||||||||||  | ||||||||||||    
T  28719290 tattcttgtcacttgggtagcaatgatgtgttgctagatacatctcattgtttataa 28719234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 31097410 - 31097470
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||    |||||||||||||||||    
T  31097410 attcttgtcacttgggtagcaatgatgtgttgctagataccgttcattgtttataatatta 31097470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 15846244 - 15846184
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  15846244 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 15846184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 21034832 - 21034892
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  21034832 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 21034892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 21399386 - 21399446
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  21399386 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 21399446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 25978436 - 25978375
Alignment:
Q  186 tattcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    ||||||||||||| || | ||||||||| ||||||||||||  | ||||||||||| |||||    
T  25978436 tattcttgtcacttgggtgacaatgatgtgttgctagataccgctcattgtttatagtatta 25978375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 14147614 - 14147674
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| | ||||||||| | | |||||||||||||||||    
T  14147614 attcttgtcacttgggtagcaatgatgtgatgctagatattgctcattgtttataatatta 14147674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 20147263 - 20147203
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  20147263 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 20147203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 26816886 - 26816946
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    ||||||||||||  | || |||||||| ||||||||||||  | |||||||||||||||||    
T  26816886 attcttgtcactttggtagcaatgatgtgttgctagataccgctcattgtttataatatta 26816946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 24249741 - 24249681
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  24249741 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 24249681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 24763379 - 24763319
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||| ||||||| | |||||||||||| ||||||||||||  | |||||||||||||||||    
T  24763379 attcgtgtcacttgaataacaatgatgtgttgctagatacggctcattgtttataatatta 24763319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 30174970 - 30175030
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || | |||||| ||||||||||||  | |||||||||||||||||    
T  30174970 attcttgtcacttgggtagccatgatgtgttgctagataccgctcattgtttataatatta 30175030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 19706147 - 19706087
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  19706147 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 19706087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 28134431 - 28134371
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  28134431 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 28134371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 47667193 - 47667133
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  47667193 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 47667133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 22613086 - 22613144
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatat 245  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||    
T  22613086 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatat 22613144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 9456709 - 9456769
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || | |||||| ||||||||||||  | |||||||||||||||||    
T  9456709 attcttgtcacttgggtagccatgatgtgttgctagataccgctcattgtttataatatta 9456769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 9460805 - 9460865
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || | |||||| ||||||||||||  | |||||||||||||||||    
T  9460805 attcttgtcacttgggtagccatgatgtgttgctagataccgctcattgtttataatatta 9460865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 20779354 - 20779294
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || | |||||| ||||||||||||  | |||||||||||||||||    
T  20779354 attcttgtcacttgggtagccatgatgtgttgctagataccgctcattgtttataatatta 20779294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 22669966 - 22669906
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  22669966 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 22669906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 33283565 - 33283505
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | ||||||||||| |||||    
T  33283565 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatagtatta 33283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 42816698 - 42816638
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||||    
T  42816698 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttatgatatta 42816638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 27138 - 27196
Alignment:
Q  189 tcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  27138 tcttgtcacttggttagcaatgatgtgttgctagatacctctcattgtttataatatta 27196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 12657 - 12597
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || |||||||| ||||||||||||  | ||||||||||| |||||    
T  12657 attcttgtcacttggttagcaatgatgtgttgctagataccgctcattgtttatagtatta 12597  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 120323 - 120383
Alignment:
Q  187 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 247  Q
    |||||||||||| || || | |||||| ||||||||||||  | |||||||||||||||||    
T  120323 attcttgtcacttgggtagccatgatgtgttgctagataccgctcattgtttataatatta 120383  T

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