View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18754_low_3 (Length: 281)
Name: NF18754_low_3
Description: NF18754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18754_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 13852957 - 13852690
Alignment:
| Q |
10 |
aagaatatgaatattttggtaaaaggtacatggaattgggttcatagttttgaagagaggtgagtgtgataaccagctccagcacatggtgcatatgta- |
108 |
Q |
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| T |
13852957 |
aagaatatgaatattttggtaaaaggtacatggaattgggttcatagttttgaagagaggtgagtgtgataaccagctccagcacatggtgcatatgttg |
13852858 |
T |
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| Q |
109 |
tttgctgacctcatattcaagaagatttttgacatcatatttatacaagaccaatttaacaatcatatttctagttgaaaatagttaaaattatttaaga |
208 |
Q |
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| T |
13852857 |
tttgctgacctcatattcaagaagatttttgacatcatatttatacaagaccaatttaacaatcatatttcttgttgaaaatatttaaaattatttaaga |
13852758 |
T |
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| Q |
209 |
agtgtttcacactca-tttagcttgctttattttcaaatcatatttctattattatttcacatacatg |
275 |
Q |
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| T |
13852757 |
agtgtttcacactcattttagcttactttattttcaaatcatatttctattattatttcacatacatg |
13852690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 13845677 - 13845623
Alignment:
| Q |
111 |
tgctgacctcatattcaagaagatttttgacatcatatttatacaagaccaattt |
165 |
Q |
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| T |
13845677 |
tgctgacctcatattcaagaagatttttgacatcatattgatcaaagaccaattt |
13845623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 13845805 - 13845756
Alignment:
| Q |
10 |
aagaatatgaatattttggtaaaaggtacatggaattgggttcatagttt |
59 |
Q |
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| T |
13845805 |
aagaataggaatattttggcaagaggtacacggaattgggttcaaagttt |
13845756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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