View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18754_low_4 (Length: 252)
Name: NF18754_low_4
Description: NF18754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18754_low_4 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 32309921 - 32309673
Alignment:
| Q |
4 |
aatcataggagcataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaag |
103 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309921 |
aatcataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaag |
32309822 |
T |
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| Q |
104 |
aacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcatgtcaactttatcaaaa |
203 |
Q |
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||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
32309821 |
aacggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaa |
32309722 |
T |
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| Q |
204 |
cttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttc |
252 |
Q |
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| T |
32309721 |
cctttcaatgtttgatttggaatagcctgcttctcataggaaccatttc |
32309673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 32305788 - 32305540
Alignment:
| Q |
4 |
aatcataggagcataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaag |
103 |
Q |
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| T |
32305788 |
aatcataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaag |
32305689 |
T |
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| Q |
104 |
aacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcatgtcaactttatcaaaa |
203 |
Q |
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| T |
32305688 |
aacggaatctcttgtgacaagagcaagtatgtcagtacaagacacaacgccgggacatgcttgatccacctcctccttgatcaagtcaactttgtcaaaa |
32305589 |
T |
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| Q |
204 |
cttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttc |
252 |
Q |
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| T |
32305588 |
cctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttc |
32305540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 32564930 - 32565161
Alignment:
| Q |
21 |
taaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaacggaatctcttgcag |
120 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |
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| T |
32564930 |
taaagtgaaaatgcatcagaattaagagcattcaacagaagatatatgttataaacttataggtgcgaggaacataccaaaagaacggaatctcttgcgg |
32565029 |
T |
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| Q |
121 |
cgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcatgtcaactttatcaaaacttttcaacatttgatt |
220 |
Q |
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| T |
32565030 |
caagagcaagtatgtcagcacacgacacaatgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatt |
32565129 |
T |
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| Q |
221 |
tggaatagcctgcttctcttaggaaccgtttc |
252 |
Q |
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| T |
32565130 |
tggaatagcctgcttctcataggaaccgtttc |
32565161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 32814619 - 32814784
Alignment:
| Q |
87 |
taggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatca |
186 |
Q |
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|||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||| |
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| T |
32814619 |
taggaacaaaccaaaagaacggaatctcttacggcaagagcaagtatgtcagcacaagaaacaacgccgggacatgcttgctccacctcttccttgatca |
32814718 |
T |
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| Q |
187 |
tgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttc |
252 |
Q |
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| T |
32814719 |
agtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttc |
32814784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 28215204 - 28215365
Alignment:
| Q |
84 |
tgttaggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaa |
183 |
Q |
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||||| ||||||||||||| |||||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28215204 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttccacctcctccttaa |
28215303 |
T |
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| Q |
184 |
tcatgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaa |
245 |
Q |
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||| ||||||||| ||||||| ||| || ||||||||||||||||||||||||| |||||| |
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| T |
28215304 |
tcaagtcaactttgtcaaaaccttttaatgtttgatttggaatagcctgcttctcataggaa |
28215365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 84 - 252
Target Start/End: Complemental strand, 28221052 - 28220884
Alignment:
| Q |
84 |
tgttaggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaa |
183 |
Q |
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||||| ||||||||||||| |||||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
28221052 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaa |
28220953 |
T |
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| Q |
184 |
tcatgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttc |
252 |
Q |
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||| ||||||||| ||| || |||||| |||||||||||||||| |||||||| ||||||| ||||| |
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| T |
28220952 |
tcaagtcaactttgtcattacctttcaatgtttgatttggaatagcttgcttctcataggaactgtttc |
28220884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 32787366 - 32787451
Alignment:
| Q |
15 |
cataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaa |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32787366 |
cataaataaagtgaaaatgcatcagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaa |
32787451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 32814567 - 32814610
Alignment:
| Q |
4 |
aatcataggagcataaataaagtgaaaatgcataagaattaaga |
47 |
Q |
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||||||||| ||||||||||||||||||||||| | |||||||| |
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| T |
32814567 |
aatcataggtgcataaataaagtgaaaatgcatcataattaaga |
32814610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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