View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18754_low_5 (Length: 236)
Name: NF18754_low_5
Description: NF18754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18754_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2343613 - 2343390
Alignment:
| Q |
1 |
atatatactatatataaagaaaatagcctcgtttaggaggttggtctgacttttttgttattcctcaaggtgtgtcaaagccacaaagtcaagaagaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2343613 |
atatatactatatataaagaaaatagcctcgtttaggaggttggtctgacttttttgttattcctgaaggtgtgtcaaagccacaaagtcaagaagaaaa |
2343514 |
T |
|
| Q |
101 |
gcaatgactcgatgagaaatatagatagcaaattaatgtgtggataacttaacaga-gaccacatggaaaaaggtaaatgacagctcaaacttttgcttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
2343513 |
gcaatgactcgatgagaaatatagatagcaaattaatgtgtggataacttaacagaggaccacatggaaaaaggtaaatgacagctcaaacttttgcgtt |
2343414 |
T |
|
| Q |
200 |
caactcaattcagatgtaaatact |
223 |
Q |
| |
|
|||||||||||||||| ||||||| |
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| T |
2343413 |
caactcaattcagatgcaaatact |
2343390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 2340776 - 2340664
Alignment:
| Q |
112 |
atgagaaatatagatagcaaattaatgtgtggataacttaacagag-accacatggaaaaaggtaaatgacagctcaaacttttgctttcaactcaattc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | ||| |
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| T |
2340776 |
atgagaaatatagatagcaaattaatgtttggataacttaacagaggaccacatggaaaaaggtaaatgacagctcaaacttttgtgttcaactaacttc |
2340677 |
T |
|
| Q |
211 |
agatgtaaatact |
223 |
Q |
| |
|
||||||||||||| |
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|
| T |
2340676 |
agatgtaaatact |
2340664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 7750970 - 7750863
Alignment:
| Q |
112 |
atgagaaatatagatagcaaattaatgtgtggataacttaacagagaccacatggaaaaaggtaaatgacagctcaaacttttgctttcaactcaattca |
211 |
Q |
| |
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|||| ||||| ||||||||||||||| | || || |||||||| |||| ||||||||||||||| ||||||||||||| ||||| ||||||| | |||| |
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| T |
7750970 |
atgataaatacagatagcaaattaatatttgaatcgcttaacag-gaccccatggaaaaaggtaagtgacagctcaaacatttgcattcaactgacttca |
7750872 |
T |
|
| Q |
212 |
gatgtaaat |
220 |
Q |
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||||||||| |
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|
| T |
7750871 |
gatgtaaat |
7750863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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