View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18754_low_6 (Length: 232)
Name: NF18754_low_6
Description: NF18754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18754_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4195659 - 4195442
Alignment:
| Q |
1 |
atttccggttaaccataacctgataatgaccagaatcatgaccaatccaaccactttgaatccaaagaagacccattaatcctccagaaagcacgtgcac |
100 |
Q |
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| T |
4195659 |
atttccggttaaccataacctgataatgaccagaatcatgaccaatccaaccactttgaatccaaagaagacccattaatcctccagaaagcacgtgcac |
4195560 |
T |
|
| Q |
101 |
aaccgcgctatcacaaaacaaaacaccataaacactgacaaagaacataacagaaataatggacagtaaaactaaaacaccgtgtcctttctcttcgaac |
200 |
Q |
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| T |
4195559 |
aaccgcgctatcacaaaacaaaacaccataaacactgacaaagaacataacagaaataatggacagtaaaagtaaaacaccgtgtcctttctcttcgaac |
4195460 |
T |
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| Q |
201 |
aaacccagtttggttagt |
218 |
Q |
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| T |
4195459 |
aaacccagtttggttagt |
4195442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 4186615 - 4186488
Alignment:
| Q |
13 |
ccataacctgataatgaccagaatcatgaccaatccaaccactttgaatcca-aagaagacccattaatcctccagaaagcacgtgcacaaccgcgctat |
111 |
Q |
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| T |
4186615 |
ccataatctgatagtgacaagaatcatgactaatccaaccactttgaatccacaagaa-acccattaacccaccacaacacacgcacacacacgaactat |
4186517 |
T |
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| Q |
112 |
cacaaaacaaaacaccataaacactgaca |
140 |
Q |
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| T |
4186516 |
cagaaaacaaaacaccacaaacactgaca |
4186488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 24417480 - 24417512
Alignment:
| Q |
14 |
cataacctgataatgaccagaatcatgaccaat |
46 |
Q |
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| T |
24417480 |
cataacctcataatgaccagaatcatgaccaat |
24417512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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