View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18755_high_1 (Length: 663)
Name: NF18755_high_1
Description: NF18755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18755_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 298 - 647
Target Start/End: Complemental strand, 5897762 - 5897413
Alignment:
| Q |
298 |
atgcacagattttgtgggtcaccactacttccaacnnnnnnngtttcaactataaacataattgtgttcttccactagttagttaactcgatgtatatcc |
397 |
Q |
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| T |
5897762 |
atgcacagattttgtgggtcaccactacttccaactttttttgtttcaactataaacataattgtgttcttccactagttagttaactcgatgtatatcc |
5897663 |
T |
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| Q |
398 |
atttatatatcgagtgtgtaagtttctcgtgacttcactagcccttagagcaaaggtttttcgtgactttacttcaagttggttcccatttgtttgcgtg |
497 |
Q |
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| T |
5897662 |
atttatatatcgagtgtataagtttctcgtgacttcactagcccttagagcaaaggtttttcgtgactttacttcaagttggttcccatttgtttgcgtg |
5897563 |
T |
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| Q |
498 |
atcttaattaattgatttgtttgaacatttttattactgcttacgtttgttttattgtttctatatcttgtcgatcttttattttgtggagagatttaac |
597 |
Q |
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| T |
5897562 |
atcttaattaattgatttgtttgaacatttttattactgcttacgtttgttttattgtttctatatcttgtcgatcttttattttgtggagagatttaac |
5897463 |
T |
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| Q |
598 |
tgttaataaattttgtcgttcaaaacaaatttcaaaggggagttcaaaat |
647 |
Q |
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| T |
5897462 |
tattaataaattttatcgttcaaaacaaatttcaaaggggagttcaaaat |
5897413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 5898120 - 5897838
Alignment:
| Q |
18 |
tgatacaaacttttactatctacaaaaaatctatgaaatttcgttgcttggttattgttcaatccaattcaaacgtgaagaagaagagaactatacgtgt |
117 |
Q |
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| T |
5898120 |
tgatacaaactttaactatctacaaaaaatctatgaaatttcgttgcttggttattggtcaatccaattcaaacgtgaagaagaagagaactatacgtgt |
5898021 |
T |
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| Q |
118 |
tcagttgctgatcaagaatcaaggaaaagaactaaattgtacttatccatataacgtggctgcctcatatatagaattaatgaagcatgaattccatgcc |
217 |
Q |
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| T |
5898020 |
tcagttgctgatcaagaatcaaggaaaagaactaaattgtactcatccatataacgtggctgcctcatatatagaattaatgaagcatgaattccatgcc |
5897921 |
T |
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| Q |
218 |
aatgagagattttcaggnnnnnnnggcaccattaccaagttagattgtgaattttgttccttttcaacaagtgcttatatatgc |
301 |
Q |
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| T |
5897920 |
aatgagagattttcagg-aaaaaaggcaccattaccaagttagattgtgaaatttgttccttttcaacaagtgcttatatatgc |
5897838 |
T |
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