View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18755_low_2 (Length: 616)
Name: NF18755_low_2
Description: NF18755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18755_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 14 - 601
Target Start/End: Complemental strand, 42474610 - 42474032
Alignment:
| Q |
14 |
gaaatgctctacacaaaactgattatataaatgctaacttgctctgctaannnnnnnnacgtccaaccagcaaagtcttttggtggttcaatccataagt |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
42474610 |
gaaatgctctacacaaaactgattatataaatgcttacttgctctgctaattttttttacg---------caaagtcttttggtggttcaatccataagt |
42474520 |
T |
|
| Q |
114 |
tctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtcatcgagagagaatgatatgcaacgctttccatagaaacg |
213 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42474519 |
tctcaaaagcatttggttctaccaggtcacgacactgcttggtgggataatatctatggtcatcaagagagaatgatatgcaacgctttccatagaaacg |
42474420 |
T |
|
| Q |
214 |
gactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaaaccagcaaaatgtgtcactccatctagtgtt |
313 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42474419 |
gactttagggaagtagactctgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaaaccagcaaaaagtgtcactccatctagtgtt |
42474320 |
T |
|
| Q |
314 |
ctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcctttgtgctcta |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474319 |
ctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcctttgtgctcta |
42474220 |
T |
|
| Q |
414 |
tcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcggaggtacttcgagaacactccaagtgcaatcaagtgggtc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474219 |
tcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcggaggtacttcgagaacactccaagtgcaatcaagtgggtc |
42474120 |
T |
|
| Q |
514 |
aaacacccctagccaacctgtgtggctaagacaataaaataatccgttcgaaatgataagcttatcgcacatgatgctacaggagagt |
601 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42474119 |
aaacacccctagccaacctgtgtggctaagacaataaaataatccgttcgaaatgataagcttattgcacatgatgctacaggagagt |
42474032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 75 - 586
Target Start/End: Complemental strand, 42480093 - 42479582
Alignment:
| Q |
75 |
tccaaccagcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtc |
174 |
Q |
| |
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|||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||| | | ||||||||||||| |||| |
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| T |
42480093 |
tccagccagtaaagtcttttggtggttcaatccagaagttctcaaaagtatttggttctaccttgtcacgacactgctcactgggataatatctacggtc |
42479994 |
T |
|
| Q |
175 |
atcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagat |
274 |
Q |
| |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
42479993 |
atcaagagagaatgatatgcaacgttttccatagaaacggactttagggaagtagacactgtttctcattattccagtggcgtaagtcctagaatgagat |
42479894 |
T |
|
| Q |
275 |
gacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccac |
374 |
Q |
| |
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|||||||||| ||||||| |||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42479893 |
gacaaaaaactagcaaaaagtgttactccatttagtgatctcacctctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccac |
42479794 |
T |
|
| Q |
375 |
aacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcgg |
474 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||| |||||||||||||||| |
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| T |
42479793 |
aacatatatgaactacaaatatatttcctttgtgctctatcataaatttccctttcgaccaatttttggcagtagaactctctgctaggcatttgggcgg |
42479694 |
T |
|
| Q |
475 |
aggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtggctaagacaataaaataatccgttcgaaatgataagc |
574 |
Q |
| |
|
|||||||| || |||| ||||||| | |||||||||||||||||||||||||||||| ||| ||| |||||||||||||| || || |||| || |||| |
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| T |
42479693 |
aggtactttgaaaacagtccaagtacgttcaagtgggtcaaacacccctagccaacctctgtcgctcagacaataaaataacccattagaaaagacaagc |
42479594 |
T |
|
| Q |
575 |
ttatcgcacatg |
586 |
Q |
| |
|
|||||||||||| |
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| T |
42479593 |
ttatcgcacatg |
42479582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 555
Target Start/End: Complemental strand, 42467949 - 42467416
Alignment:
| Q |
21 |
tctacacaaaactgattatataaatgcta-acttgctctgctaannnnnnnnacgtccaaccagcaaagtcttttggtggttcaatccataagttctcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||| || |||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
42467949 |
tctacacaaaactgattatataaatgctttacttgctccgctaattttttttacatccagccagcaaagtcttttggtggttcaatc-ataagttctcaa |
42467851 |
T |
|
| Q |
120 |
aagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtcatcgagagagaatgatatgcaacgctttccatagaaacggacttt |
219 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
42467850 |
aagcatttggttctac-aagtcaagacactgtttagtgggataatatctatggtcatcgagagagaatgatatgcaacgctttccatagaaatgggcttt |
42467752 |
T |
|
| Q |
220 |
agggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaaaccagcaaaatgtgtcactccatctagtgttctcact |
319 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
42467751 |
agggaagtagacgctgtttctcataattccagtgacgtaagtcctagaatgagatgacaaaaaactagcaaaaagtgtcactccatctagtgttctcacc |
42467652 |
T |
|
| Q |
320 |
tctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcctttgtgctctatcataa |
419 |
Q |
| |
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||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
42467651 |
tcttttcattccattagtgtccgatctaatttgaaaattattgggtcctcaccacaacatatatgaatgacaaatatatttcctttgtgatctatcataa |
42467552 |
T |
|
| Q |
420 |
atttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcggaggtacttcgagaacactccaagtgcaatcaagtgggtcaaacac |
519 |
Q |
| |
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| ||||||||| | ||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||| |||||||| | |||| |||||||||||| |
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| T |
42467551 |
agctctctttcgccgagtttttggcagtagaactctctaataggcatttgggcggaggtacaacgagaacgctccaagtatattcaattgggtcaaacac |
42467452 |
T |
|
| Q |
520 |
ccctagccaacctgtgtggctaagacaataaaataa |
555 |
Q |
| |
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|| ||| ||||| |||||||| | |||||||||||| |
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| T |
42467451 |
ccgtagacaaccagtgtggcttaaacaataaaataa |
42467416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 172 - 334
Target Start/End: Original strand, 26046498 - 26046660
Alignment:
| Q |
172 |
gtcatcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatga |
271 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||| ||||| ||||| || || |||||| |||||| |
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|
| T |
26046498 |
gtcatcaagagagaatgatatgcaacgctttccataaaaacgaactttagagaagtagatactgttcctcatatttccaaggaggtcagtccttgaatga |
26046597 |
T |
|
| Q |
272 |
gatgacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccatt |
334 |
Q |
| |
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|| ||||| |||| |||||| | || |||||||||||||| | | |||| |||||||||| |
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|
| T |
26046598 |
gaagacaagaaactagcaaatagagttgctccatctagtgtttttagctcttcccattccatt |
26046660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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