View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18755_low_5 (Length: 300)
Name: NF18755_low_5
Description: NF18755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18755_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 44312332 - 44312607
Alignment:
| Q |
1 |
caccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44312332 |
caccatttgaaaatttctctccagaaacttttgagacgga--------gaacatcggcagaagtcattatatatctaacagacccatcagtaaaagtatc |
44312423 |
T |
|
| Q |
101 |
tccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataatgtctcttacccaaacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
44312424 |
tccagatctaagaatagcaccaaacacaaaaacaatttctccagcatgagcttcatcaacttccttaatcttaccataatgtctcttacccaaacaagga |
44312523 |
T |
|
| Q |
201 |
atcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaat |
284 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44312524 |
atcttaatcttcttaccagtgttaacgtttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaat |
44312607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 43896091 - 43896372
Alignment:
| Q |
1 |
caccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| || ||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
43896091 |
caccatttgaaaatttctctccagaatcttatgagatagaataatcaggaacatcggcagaagtcattgtatatctaacagacccatcagtgaaagtatc |
43896190 |
T |
|
| Q |
101 |
tccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataatgtctcttacccaaacaagga |
200 |
Q |
| |
|
||||||| ||||||||||| | || |||| || ||| |||||||||||||||||||||||||||| |||| |||||| |||||||||| ||||| |||| |
|
|
| T |
43896191 |
tccagatttaagaatagcatctaacacaataataatctctccagcatgagcttcatcaacttcctcaatcttatcatcatgtctcttaaacaaacgagga |
43896290 |
T |
|
| Q |
201 |
atcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagtta |
282 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43896291 |
atctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagtta |
43896372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 44301437 - 44301719
Alignment:
| Q |
1 |
caccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44301437 |
caccatttgaaaatttctctccagaatcttttgacaccgaataagtaggaacatcggcagaagacattgtatatctaacagacccatcagtaaaagtatc |
44301536 |
T |
|
| Q |
101 |
tccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataatgtctcttacccaaacaagga |
200 |
Q |
| |
|
||||||| |||||| | | | || |||| |||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||| ||| | | | |
|
|
| T |
44301537 |
tccagatttaagaacaatagctaacacaataacaatttctccggcatgagcttcatcaacaaactcaatcacatcatcatgtctcttagacaagctataa |
44301636 |
T |
|
| Q |
201 |
atcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaa |
283 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
44301637 |
atctgaatcttctcaccagtgttaacatttgtaataaaatcacccttcttgataacaccctgatagattcttagacaagttaa |
44301719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 44306560 - 44306828
Alignment:
| Q |
16 |
tctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaat |
115 |
Q |
| |
|
||||||||||| ||| |||||| || |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44306560 |
tctctccagaatcttatgagacagaataagtaggaacatcggcagaagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagaag |
44306659 |
T |
|
| Q |
116 |
agcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctca |
215 |
Q |
| |
|
|||| | || | | |||||||||||||||||||||||||||||| | || |||| ||||| ||||||||||| ||| | |||||| |||||||||| |
|
|
| T |
44306660 |
agcatcgaacaacataacaatttctccagcatgagcttcatcaacatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctca |
44306759 |
T |
|
| Q |
216 |
ccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaat |
284 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306760 |
ccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaat |
44306828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 43895568 - 43895668
Alignment:
| Q |
7 |
ttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccaga |
106 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||| ||| | ||| || | ||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43895568 |
ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacagaggtcattgaatatctaacagacccatcagcaaaagtatctccaga |
43895667 |
T |
|
| Q |
107 |
t |
107 |
Q |
| |
|
| |
|
|
| T |
43895668 |
t |
43895668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 44305992 - 44306092
Alignment:
| Q |
7 |
ttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccaga |
106 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||| ||| | ||| || | ||||||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
44305992 |
ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacagaggtcattgaatatctaacggacccatcagcaaaagtatctccaga |
44306091 |
T |
|
| Q |
107 |
t |
107 |
Q |
| |
|
| |
|
|
| T |
44306092 |
t |
44306092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 4084203 - 4084493
Alignment:
| Q |
1 |
caccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
4084203 |
caccatttgaaaatttctctcctgaatcctttgagaccgaataagcaggaacatcggcagaagtcattgtatatctaatagacccgtcagtaaaagtatc |
4084302 |
T |
|
| Q |
101 |
tccagatctaagaatagcaccaaat------acaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataatgtctcttacccaaa |
194 |
Q |
| |
|
||||||| ||||||||||| |||| |||| ||||| ||||||||||||||||||||||||| |||||||| ||| || |||||||||| |||| |
|
|
| T |
4084303 |
tccagatttaagaatagcatcaaactttaacacaataacaagttctccagcatgagcttcatcaactgccttaatcgtattatcatgtctcttaaacaaa |
4084402 |
T |
|
| Q |
195 |
caaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaatt |
285 |
Q |
| |
|
| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4084403 |
cgaggaatcttaatcttcttaccggtgttaacatttgtaataaaatcacccttcttgataacaccctgatagattcttagataagttaatt |
4084493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 18701695 - 18701983
Alignment:
| Q |
1 |
caccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccat---cagtaaaagt |
97 |
Q |
| |
|
|||||||||||||| | | || ||| ||||||||||||| |||||||||||||| ||||| |||||| |||||||||||||||||| | |||||||| |
|
|
| T |
18701695 |
caccatttgaaaatgtatgcccggaatcttttgagaccgaataagcaggaacatcagcagaagtcattgtatatctaacagacccattggcggtaaaagt |
18701794 |
T |
|
| Q |
98 |
atctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataat-gtctcttacccaaaca |
196 |
Q |
| |
|
|||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||||||| || ||| | | ||||||| ||||||| |
|
|
| T |
18701795 |
atctccagattcaagatgagcatcaaaaacaaaaacaatttctccagcatgagcttcatcaacttcctcgattttattaacttcgtctcttgcccaaacg |
18701894 |
T |
|
| Q |
197 |
aggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaatt |
285 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701895 |
aggaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaatt |
18701983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 8159289 - 8158981
Alignment:
| Q |
1 |
caccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcag---aggtcattatatatctaacagacccatcagtaaaagt |
97 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
8159289 |
caccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcagcagcagaagtcattatatatctaacagacccatcggtaaaagt |
8159190 |
T |
|
| Q |
98 |
atctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttc------------------atcaacttccttaatcatatcataa |
179 |
Q |
| |
|
|||||||||| |||| |||| |||| ||||||||||||||||||||||||||||| ||||||||||| | || ||||| |
|
|
| T |
8159189 |
atctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttccttgattttatcaacttcctcactctcatcatgt |
8159090 |
T |
|
| Q |
180 |
t---gtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagat |
276 |
Q |
| |
|
| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
8159089 |
tcacgtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgataaattcttaggt |
8158990 |
T |
|
| Q |
277 |
aagttaatt |
285 |
Q |
| |
|
||||||||| |
|
|
| T |
8158989 |
aagttaatt |
8158981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 409886 - 409951
Alignment:
| Q |
176 |
ataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatc |
241 |
Q |
| |
|
|||| |||||||| || || ||||| ||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
409886 |
ataacgtctcttaaacatacgaggaaccttaatcttcttaccagtgttaacattagtaataaaatc |
409951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 35857004 - 35856723
Alignment:
| Q |
4 |
catttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctcc |
103 |
Q |
| |
|
|||||||| ||| ||| | |||| ||||||||||||| ||| || |||||| |||||| ||||| |||||||||||||||||||||| || ||||| |
|
|
| T |
35857004 |
catttgaagattgctcgctagaatcttttgagaccgaataatcaagaacattggcagaagtcatagcccatctaacagacccatcagtaaatgtttctcc |
35856905 |
T |
|
| Q |
104 |
agatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataatgtctcttacccaaacaaggaatc |
203 |
Q |
| |
|
| | | | | || || |||||| |||||||| |||||||||||| |||| |||||| | ||| |||| || ||||||| |||| | || | |
|
|
| T |
35856904 |
tggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctcattaacttcatcaataccatcacaacttctcttaaacaaatgattaacc |
35856805 |
T |
|
| Q |
204 |
ttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaatt |
285 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
35856804 |
ttaatcttctcaccagtgttaacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaatt |
35856723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 15040308 - 15040348
Alignment:
| Q |
63 |
gtcattatatatctaacagacccatcagtaaaagtatctcc |
103 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
15040308 |
gtcattgtatatttaacagacccatcagtaaaagtatctcc |
15040348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 10541388 - 10541444
Alignment:
| Q |
216 |
ccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattctt |
272 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| ||| ||||||| |||||||||| |
|
|
| T |
10541388 |
ccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt |
10541444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 10846409 - 10846465
Alignment:
| Q |
216 |
ccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattctt |
272 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| ||| ||||||| ||| |||||| |
|
|
| T |
10846409 |
ccagtgttaacgtttgtaataaaatcccccttccgaatgacaccctcatatattctt |
10846465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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