View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18755_low_6 (Length: 291)
Name: NF18755_low_6
Description: NF18755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18755_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 28232912 - 28233173
Alignment:
| Q |
9 |
gaagaaaatattctatgtaacagaaaataaacagtgctacaagtaatcagtacaatatgtacatagaaaccagttgttcagtggatcatgtgaaactaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28232912 |
gaagaaaatattctatgtaacagaaaataa-cagtggtacaagtaatcagtacaat--gtacatagaaaccagttgttcagtggatcatgtgaaactaat |
28233008 |
T |
|
| Q |
109 |
taaacctccacacctctacaacattggctgaagaacctctttgnnnnnnncttctattctatcttgggttattcaaaaagtttgttatccctttgtttgt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28233009 |
taaacctccacacctctacaacattggctgaagaacctctttgtttttttctcctattctatcttgggttattcaaaaagtttgttatccctttgtttgt |
28233108 |
T |
|
| Q |
209 |
catattgtatacctttatctacaagcaaatgtttctgaaatcatccaataattcattcactaatc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28233109 |
catattgtatacctttatctacaagcaaatgtttctgaaatcatccaataattcattcactaatc |
28233173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University