View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18755_low_7 (Length: 273)

Name: NF18755_low_7
Description: NF18755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18755_low_7
NF18755_low_7
[»] chr6 (11 HSPs)
chr6 (18-153)||(10929831-10929968)
chr6 (18-153)||(21630636-21630773)
chr6 (25-153)||(214879-215009)
chr6 (22-153)||(10577763-10577896)
chr6 (22-153)||(34714066-34714199)
chr6 (18-150)||(14514083-14514217)
chr6 (18-150)||(17579607-17579741)
chr6 (18-153)||(17606861-17606996)
chr6 (17-149)||(20883556-20883690)
chr6 (18-153)||(11461890-11462028)
chr6 (77-120)||(18683414-18683457)
[»] chr4 (13 HSPs)
chr4 (18-153)||(4548746-4548883)
chr4 (18-153)||(24506157-24506294)
chr4 (25-150)||(19468426-19468553)
chr4 (18-153)||(12697289-12697426)
chr4 (38-153)||(41973616-41973733)
chr4 (55-153)||(8360604-8360704)
chr4 (18-150)||(5142898-5143032)
chr4 (22-153)||(5147315-5147448)
chr4 (18-153)||(20002194-20002331)
chr4 (202-259)||(50383172-50383230)
chr4 (84-150)||(46145154-46145221)
chr4 (55-120)||(17402250-17402315)
chr4 (79-123)||(7403420-7403464)
[»] chr3 (11 HSPs)
chr3 (18-153)||(30695870-30696007)
chr3 (18-153)||(12342754-12342891)
chr3 (21-153)||(33496024-33496157)
chr3 (18-153)||(11203295-11203432)
chr3 (18-153)||(29524272-29524409)
chr3 (18-145)||(36801602-36801731)
chr3 (18-153)||(7031544-7031679)
chr3 (18-120)||(35214898-35215000)
chr3 (49-153)||(19890155-19890261)
chr3 (22-153)||(1680654-1680786)
chr3 (18-116)||(53185064-53185162)
[»] chr5 (7 HSPs)
chr5 (18-153)||(33385901-33386038)
chr5 (18-153)||(27766519-27766656)
chr5 (21-150)||(10773930-10774061)
chr5 (18-150)||(8300709-8300843)
chr5 (18-150)||(25857951-25858085)
chr5 (49-153)||(18359648-18359754)
chr5 (29-120)||(26019515-26019606)
[»] chr1 (9 HSPs)
chr1 (18-153)||(26206834-26206971)
chr1 (18-153)||(43387843-43387980)
chr1 (18-150)||(16918336-16918470)
chr1 (51-153)||(49094375-49094479)
chr1 (51-153)||(37298058-37298162)
chr1 (49-153)||(37192485-37192591)
chr1 (57-121)||(25560597-25560661)
chr1 (79-121)||(51994315-51994357)
chr1 (76-121)||(16272123-16272168)
[»] chr8 (6 HSPs)
chr8 (18-153)||(17698958-17699095)
chr8 (18-148)||(37433613-37433745)
chr8 (18-147)||(20823778-20823909)
chr8 (18-153)||(2169816-2169953)
chr8 (22-153)||(43269926-43270059)
chr8 (80-108)||(9922125-9922153)
[»] chr2 (2 HSPs)
chr2 (18-153)||(11000477-11000614)
chr2 (18-153)||(14439232-14439366)
[»] chr7 (4 HSPs)
chr7 (18-153)||(18529986-18530123)
chr7 (18-153)||(37254234-37254371)
chr7 (21-153)||(25618935-25619069)
chr7 (76-150)||(23911298-23911374)
[»] scaffold0472 (1 HSPs)
scaffold0472 (76-153)||(7395-7474)
[»] scaffold0178 (1 HSPs)
scaffold0178 (52-153)||(16865-16968)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 10929831 - 10929968
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10929831 gagcctgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacgtcttgtgcttcaacaat 10929930  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  || |||||||||||||||||||||||||||||    
T  10929931 tacagtgttcatagtaatatattccatttttgtttctt 10929968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 21630636 - 21630773
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  21630636 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcatgtcttgtgcttcaacaat 21630735  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  || |||||||||||||||||||||||| ||||    
T  21630736 tacaatgttcatagtaatatattccatttttgtgtctt 21630773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 215009 - 214879
Alignment:
Q  25 cttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca--g 122  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  |    
T  215009 cttctatgtatgggcattgactatctttgatgtaattttgatagggtagtaatctttttgtgattgttttggcacgtcttgtgcttcaacaattacagtg 214910  T
Q  123 tccatagtaatatattccatttttgtttctt 153  Q
    | |||||||||||||||||||||||||||||    
T  214909 ttcatagtaatatattccatttttgtttctt 214879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 10577763 - 10577896
Alignment:
Q  22 ccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||    
T  10577763 ccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttgacacgtcttgtgctttaacaattgca 10577862  T
Q  122 --gtccatagtaatatattccatttttgtttctt 153  Q
      || |||||||||||||||||||||||||||||    
T  10577863 gtgttcatagtaatatattccatttttgtttctt 10577896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 34714066 - 34714199
Alignment:
Q  22 ccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca 121  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||    
T  34714066 ccgcttctctgtatgggcattgactatctttgatgtaatcttgacagggttgtaatcttttggtgattgttttgccacgtcttgtgcttcaacacttaca 34714165  T
Q  122 --gtccatagtaatatattccatttttgtttctt 153  Q
      || ||| |||||||||||||||||||||||||    
T  34714166 gtgttcattgtaatatattccatttttgtttctt 34714199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 14514083 - 14514217
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  14514083 gagcccgcttctatgtttgggcattgactatccttgatgtaattttgactgtgttgtaatctttttgtgattgttttgccacgtcttgtgcttcaacaat 14514182  T
Q  118 tacag--tccatagtaatatattccatttttgttt 150  Q
    |||||  |   ||||||||||||||||||||||||    
T  14514183 tacagtatttttagtaatatattccatttttgttt 14514217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 17579607 - 17579741
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  17579607 gagcccgcttctatgtttgggcattgactatccttgatgtaattttaactgtgttgtaatctttttgtgattgttttggcacgtcttgtgcttcaacaat 17579706  T
Q  118 taca--gtccatagtaatatattccatttttgttt 150  Q
    ||||  ||   ||||||||||||||||||||||||    
T  17579707 tacagtgtttttagtaatatattccatttttgttt 17579741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 17606861 - 17606996
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||   |||||||||||||||    
T  17606861 gagcccgcttctatgtatgagcattgactatctttgatgtaattttgacagagttgtaatctttatgtgattgtttttgcac--gttgtgcttcaacaat 17606958  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  ||  ||||||||||||||||||||||||||||    
T  17606959 tacagtgtttatagtaatatattccatttttgtttctt 17606996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 20883556 - 20883690
Alignment:
Q  17 agagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaa 116  Q
    ||||||||||| |||||||||| || || |  ||||||||||||||||| |||||| | ||||||| ||||||| | |||||| ||||||||||||||||    
T  20883556 agagcccgcttttatgtatgggtatcgattgactttgatgtaattttgatagggttttgatcttttcgtgattgatatggcacgtcttgtgcttcaacaa 20883655  T
Q  117 ttaca--gtccatagtaatatattccatttttgtt 149  Q
    ||| |  || |||||||||||||||||||||||||    
T  20883656 ttaaagtgttcatagtaatatattccatttttgtt 20883690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 11462028 - 11461890
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatcttttt-gtgattgttttggcacatcttgtgcttcaacaa 116  Q
    |||||||||| |||||||||| || || |  ||||||||||||||||||||| || | || ||||| ||||||||| |||||| |||||||||||| |||    
T  11462028 gagcccgcttttatgtatgggtatcgattgactttgatgtaattttgacaggattttgatttttttcgtgattgttatggcacgtcttgtgcttcatcaa 11461929  T
Q  117 ttac--agtccatagtaatatattccatttttgtttctt 153  Q
    ||||   || ||||| |||||||||||||||||||||||    
T  11461928 ttacggtgttcatagcaatatattccatttttgtttctt 11461890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 18683414 - 18683457
Alignment:
Q  77 tctttttgtgattgttttggcacatcttgtgcttcaacaattac 120  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  18683414 tctttttgtgattgttttggcacaccttgtgctgcaacaattac 18683457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 4548746 - 4548883
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  4548746 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttgacacgtcttgtgcttcaacaat 4548845  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  || |||||||||||||||||||||||||||||    
T  4548846 tacagtgttcatagtaatatattccatttttgtttctt 4548883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 24506157 - 24506294
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24506157 gagcccgcttctatgtatggacattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacgtcttgtgcttcaacaat 24506256  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
     |||  || |||||||||||||||||||||||||||||    
T  24506257 cacagtgttcatagtaatatattccatttttgtttctt 24506294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 19468426 - 19468553
Alignment:
Q  25 cttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca--g 122  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  |    
T  19468426 cttctatgtatgggcattgactatctttgatgtaatcttgacagggttgtaatttttttgtgattgttttggcacgtcttgtgcttcaacaattacagtg 19468525  T
Q  123 tccatagtaatatattccatttttgttt 150  Q
    | |||||||||||||||| |||||||||    
T  19468526 ttcatagtaatatattccgtttttgttt 19468553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 12697426 - 12697289
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||    
T  12697426 gagcccgcttctatgtatgggcattgactatccttgatataattttgacagggctgtagtctttatgtgattgttttggcacgtcttgtgcttcaacaat 12697327  T
Q  118 tacagtccata--gtaatatattccatttttgtttctt 153  Q
    ||||||   ||  |||||||||||||||||||||||||    
T  12697326 tacagtgtttatcgtaatatattccatttttgtttctt 12697289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 41973733 - 41973616
Alignment:
Q  38 gcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca--gtccatagtaatat 135  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  || |||||||||||    
T  41973733 gcattgactatctttgatgtaatcttgacagggttgtaatccttttgtgattgttttggcacgtcttgtgcttcaacaattacagtgttcatagtaatat 41973634  T
Q  136 attccatttttgtttctt 153  Q
    ||||||||||||||||||    
T  41973633 attccatttttgtttctt 41973616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 8360704 - 8360604
Alignment:
Q  55 tgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca--gtccatagtaatatattccatttttgtttct 152  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  8360704 tgtaatcttgacagggttgtaatcttttggtgattgttttggcacatcttgtgcttcaacaattacaatgttcatagtaatatattccatttttgtttct 8360605  T
Q  153 t 153  Q
    |    
T  8360604 t 8360604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 5143032 - 5142898
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||| |||||||||| || || |  ||||||||||||||||||||  || | |||||||  | |||||| |||||| |||||||||||||||||    
T  5143032 gagcccgcttttatgtatgggtatcgattgactttgatgtaattttgacagaattttgatcttttcataattgttatggcacgtcttgtgcttcaacaat 5142933  T
Q  118 tac--agtccatagtaatatattccatttttgttt 150  Q
     ||   || ||||||||||||||||||||||||||    
T  5142932 aacggtgttcatagtaatatattccatttttgttt 5142898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 5147448 - 5147315
Alignment:
Q  22 ccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac- 120  Q
    |||||| |||||||||| || || |  || ||||||||||||| ||||||| |  ||||||  |||||||| |||||| ||||||||||||||||| ||     
T  5147448 ccgcttttatgtatgggtatcgattgactctgatgtaattttggcagggttttgttcttttcttgattgttatggcacgtcttgtgcttcaacaataacg 5147349  T
Q  121 -agtccatagtaatatattccatttttgtttctt 153  Q
      || |||||||||||||||||||||||||||||    
T  5147348 gtgttcatagtaatatattccatttttgtttctt 5147315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 20002331 - 20002194
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||| |||||||| | || || |  ||||||||||||||||||||| |  | ||||||| ||||||||| |||||| |||||||||||||||||    
T  20002331 gagcccgcttttatgtatgagtatcgattgactttgatgtaattttgacaggatcttgatcttttcgtgattgttatggcacgtcttgtgcttcaacaat 20002232  T
Q  118 tac--agtccatagtaatatattccatttttgtttctt 153  Q
    |||   || |||| ||||||| ||||||||| ||||||    
T  20002231 tacggtgttcatattaatatactccatttttctttctt 20002194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 50383172 - 50383230
Alignment:
Q  202 atcattatc-ataactatatacgtcatgtacttatttttcaagtgacaaatcttgagcc 259  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50383172 atcattatccataactatatacgtcatgtacttatttttcaagtgacaaatcttgagcc 50383230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 46145221 - 46145154
Alignment:
Q  84 gtgattgttttggcacatcttgtgcttcaacaattac-agtccatagtaatatattccatttttgttt 150  Q
    ||||||||| |||||||||||||||| |||||||||| | |  ||  |||||||||||||||||||||    
T  46145221 gtgattgttatggcacatcttgtgctgcaacaattacgatttgatgttaatatattccatttttgttt 46145154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 17402250 - 17402315
Alignment:
Q  55 tgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac 120  Q
    |||||| ||||||||  | | ||||||| ||||||||||||||||| ||||||||  |||||||||    
T  17402250 tgtaatcttgacaggactttgatcttttagtgattgttttggcacaccttgtgctgtaacaattac 17402315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 7403464 - 7403420
Alignment:
Q  79 tttttgtgattgttttggcacatcttgtgcttcaacaattacagt 123  Q
    |||| ||||||||||||||||| ||||||||  ||||||||||||    
T  7403464 ttttcgtgattgttttggcacaccttgtgctgtaacaattacagt 7403420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 30695870 - 30696007
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30695870 gagcccgcttctatgtatgtgcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacgtcttgtgcttcaacaat 30695969  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  || |||||||||||||||||||||||||||||    
T  30695970 tacaatgttcatagtaatatattccatttttgtttctt 30696007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 12342754 - 12342891
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  12342754 gagcccgcttccatgtatgggcattgactatctttgatgttattttgacagggttgtaatctttatgtgattgttttggcacgtcttgtgcttcaacaat 12342853  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  || |||||||||||||||||||||||||||||    
T  12342854 tacagtgttcatagtaatatattccatttttgtttctt 12342891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 33496157 - 33496024
Alignment:
Q  21 cccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac 120  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  33496157 cccgcttctatgtatgagcattgactatctttgatgtaattttgacagg-ttgtaatctttttgtgattgttttggcacgtcttgtgcttcaaccattac 33496059  T
Q  121 a--gtccatagtaatatattccatttttgtttctt 153  Q
    |  || |||||||||||||||||||||||||||||    
T  33496058 agtgttcatagtaatatattccatttttgtttctt 33496024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 11203432 - 11203295
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||| |||||| |||||||||||||||||    
T  11203432 gagcccgcttctatgtatgggcattgactatccttgatgtaattttgactgtgttgtaatctttatgtgattgttgtggcacgtcttgtgcttcaacaat 11203333  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  ||  ||||||||||||||||||||||||||||    
T  11203332 tacagtgtttatagtaatatattccatttttgtttctt 11203295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 29524272 - 29524409
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||| | |||||||| |||||| |||||||||||||||||    
T  29524272 gagcccgcttccatgtatggacattgaatatctttgatgttattttgacagggttgtaatctttatatgattgttgtggcacgtcttgtgcttcaacaat 29524371  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  || |||||||||||||||||||||||||||||    
T  29524372 tacagtgttcatagtaatatattccatttttgtttctt 29524409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 36801602 - 36801731
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  36801602 gagcacgcttctatgtatgagcattgactatctttgatgtaatcttgacagggttgtaatctttttgtgattgttttggtacgtcttgtgtttcaacaat 36801701  T
Q  118 taca--gtccatagtaatatattccatttt 145  Q
     |||  || |||||||||||||||||||||    
T  36801702 cacagtgttcatagtaatatattccatttt 36801731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 7031544 - 7031679
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||  ||||||||||||||||||| |||||||||||||||||    
T  7031544 gagcccgcttctatgtttgggcattgactatccttgatgtaattttgactgtgttgtaatc--tttgtgattgttttggcacgtcttgtgcttcaacaat 7031641  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  ||   |||||||||||||||||||||||||||    
T  7031642 tacagtgtttttagtaatatattccatttttgtttctt 7031679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 35214898 - 35215000
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||| ||| |||| |||| || ||||||||||||||||||||| || |||| ||||||| ||||||||| || |||||||||||||||||||||    
T  35214898 gagcccgcttttatctatgtgcatcgattatctttgatgtaattttgacgggattgtgatcttttcgtgattgttatgacacatcttgtgcttcaacaat 35214997  T
Q  118 tac 120  Q
    |||    
T  35214998 tac 35215000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 19890261 - 19890155
Alignment:
Q  49 ctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattacagtc--catagtaatatattccattttt 146  Q
    ||||||||||||| ||||| | || | |||||||  |||||| | |||||| |||| ||||  ||||||||| ||   ||||||||||||||||||||||    
T  19890261 ctttgatgtaattctgacaagattttgatcttttcatgattgctatggcacgtcttatgctctaacaattacggtgttcatagtaatatattccattttt 19890162  T
Q  147 gtttctt 153  Q
    |||||||    
T  19890161 gtttctt 19890155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 1680654 - 1680786
Alignment:
Q  22 ccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac- 120  Q
    |||||| ||||||||||||| || |  ||||| |||||||| |||||| |  |  ||||| |||||||||| ||||||  ||||||||||||||||| |     
T  1680654 ccgcttttatgtatgggcatcgattgactttgttgtaattt-gacaggatgttgctctttctgtgattgttatggcacgccttgtgcttcaacaatttcg 1680752  T
Q  121 -agtccatagtaatatattccatttttgtttctt 153  Q
      || |||| ||||||| | ||||||||||||||    
T  1680753 ttgttcataataatataattcatttttgtttctt 1680786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 53185064 - 53185162
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaa 116  Q
    |||||||||| ||| ||||| |||||| |  ||||| |||||||||| |||  || | |||| || ||||||||| ||| ||| |||||||||||||||    
T  53185064 gagcccgcttttatatatggacattgattgactttgttgtaattttgtcagaattttgatctcttcgtgattgttatggtacaccttgtgcttcaacaa 53185162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 33385901 - 33386038
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  33385901 gagcccgcttctatgtatgggcattgactatctttgatgtaatcttgacagggttgtaatctttttgtgattgttttggcacgtcttatgcttcaacaat 33386000  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  || |||||||||||||||||||||||||||||    
T  33386001 tacagtgttcatagtaatatattccatttttgtttctt 33386038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 27766656 - 27766519
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  27766656 gagcccgcttctatgcatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttgacacgtcttgtgctacaacaat 27766557  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  || |||||||||||||||||||||| ||||||    
T  27766556 tacaatgttcatagtaatatattccatttttatttctt 27766519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 10774061 - 10773930
Alignment:
Q  21 cccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac 120  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  10774061 cccgcttctctgtatgggcattaactatctttgatgtaatcttgacagggttctaatcttttggtgattgttttggcacgtcttgtgcttcaacaattac 10773962  T
Q  121 a--gtccatagtaatatattccatttttgttt 150  Q
    |  || ||||||||||||||||||||||||||    
T  10773961 agtgttcatagtaatatattccatttttgttt 10773930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 8300709 - 8300843
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  8300709 gagcccgcttctatgtttgggcattgactatccttgatgtaattttgactgtgttgtaatctttttgtgattgttttggcacgtcttgtgcttcaacaat 8300808  T
Q  118 taca--gtccatagtaatatattccatttttgttt 150  Q
    ||||  ||   ||||||||||||||||||||||||    
T  8300809 tacagtgtttttagtaatatattccatttttgttt 8300843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 25857951 - 25858085
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25857951 gagcccgcttctatgtttgggcattgactatccttgatgtaattttgactgtgttgtaatctttttgtgattgttttggcacgtcttgtgcttcaacaat 25858050  T
Q  118 taca--gtccatagtaatatattccatttttgttt 150  Q
    ||||  ||   |||||||||||| |||||||||||    
T  25858051 tacagtgtttttagtaatatattacatttttgttt 25858085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 18359648 - 18359754
Alignment:
Q  49 ctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattacag--tccatagtaatatattccattttt 146  Q
    ||||||||||||||||||||  || | || |||| || |||||| |||||| |||||||||||||||||||| |  | ||||||||||||||||||||||    
T  18359648 ctttgatgtaattttgacagaattttgatattttcgtaattgttatggcacgtcttgtgcttcaacaattacggtattcatagtaatatattccattttt 18359747  T
Q  147 gtttctt 153  Q
    || ||||    
T  18359748 gtatctt 18359754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 26019515 - 26019606
Alignment:
Q  29 tatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac 120  Q
    ||||||||||||| ||||  ||||| |||||| ||||||   || | ||||||  ||||||||||||||||| |||||||| ||||||||||    
T  26019515 tatgtatgggcatcgactgactttgttgtaatattgacaaaattttgatctttccgtgattgttttggcacaccttgtgctgcaacaattac 26019606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 26206834 - 26206971
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  26206834 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagagttgtaatctttttgtgattgttttggcatgtcttgtgcttcaacaat 26206933  T
Q  118 tacag--tccatagtaatatattccatttttgtttctt 153  Q
    |||||  | |||||||||||||||||||||||||||||    
T  26206934 tacagtattcatagtaatatattccatttttgtttctt 26206971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 43387980 - 43387843
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  43387980 gagcccgcttctatgtatgggcattgactatccttgatgtaattttgacagggttgtaatctttatgtgattgttttggcacgtcttgtgcttcaacaat 43387881  T
Q  118 taca--gtccatagtaatatattccatttttgtttctt 153  Q
    ||||  ||   |||||||||||||||||||||||||||    
T  43387880 tacagtgtttttagtaatatattccatttttgtttctt 43387843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 16918336 - 16918470
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  16918336 gagcccgcttctatgtttgggcattgactatccttgatgtaattttgactgtgttgtaatctttttgtgattgttttgacacgtcttgtgcttcaacaat 16918435  T
Q  118 taca--gtccatagtaatatattccatttttgttt 150  Q
    ||||  ||   ||||||||||||||||||||||||    
T  16918436 tacagtgtttttagtaatatattccatttttgttt 16918470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 49094479 - 49094375
Alignment:
Q  51 ttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca--gtccatagtaatatattccatttttgt 148  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||  ||  ||||||||||||| |||||||||    
T  49094479 ttgatgtaattttgagagggttgtaatctttatgtgattgttttggcacgtcttgtgcttcaacaattacagtgtttatagtaatatatttcatttttgt 49094380  T
Q  149 ttctt 153  Q
    |||||    
T  49094379 ttctt 49094375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 37298058 - 37298162
Alignment:
Q  51 ttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac--agtccatagtaatatattccatttttgt 148  Q
    ||||||||||||||||||  || | ||||||| | ||||||| |||||| |||||||||||||| |||||   || ||||||||||||||||||||||||    
T  37298058 ttgatgtaattttgacagaattttgatcttttcgcgattgttatggcacttcttgtgcttcaactattacggtgttcatagtaatatattccatttttgt 37298157  T
Q  149 ttctt 153  Q
    |||||    
T  37298158 ttctt 37298162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 37192485 - 37192591
Alignment:
Q  49 ctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac--agtccatagtaatatattccattttt 146  Q
    ||||||||||||| ||||||| || | ||||||| |||||||||  ||||| |||||| |||||||||||||   || ||||||||||||||| ||||||    
T  37192485 ctttgatgtaattctgacaggattttgatcttttcgtgattgttagggcacgtcttgtacttcaacaattacggtgttcatagtaatatattctattttt 37192584  T
Q  147 gtttctt 153  Q
    |||||||    
T  37192585 gtttctt 37192591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 25560661 - 25560597
Alignment:
Q  57 taattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca 121  Q
    ||||||||||||  || ||||||||  ||||||||| | |||| |||||||||||||||||||||    
T  25560661 taattttgacagaattttaatctttccgtgattgttatagcacgtcttgtgcttcaacaattaca 25560597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 51994315 - 51994357
Alignment:
Q  79 tttttgtgattgttttggcacatcttgtgcttcaacaattaca 121  Q
    |||||||||||||||||||||  ||||||||| ||||||||||    
T  51994315 tttttgtgattgttttggcacgccttgtgctttaacaattaca 51994357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 16272168 - 16272123
Alignment:
Q  76 atctttttgtgattgttttggcacatcttgtgcttcaacaattaca 121  Q
    ||||||| ||||||||| ||||||  ||||||||||||||||||||    
T  16272168 atcttttcgtgattgttatggcacggcttgtgcttcaacaattaca 16272123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 17699095 - 17698958
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  17699095 gagcccgcttctatgtatggacattgactatctttgatgtaatcttgatagggttgtaatctttttgtgattgttttggcacgttttgtgcttcaacaat 17698996  T
Q  118 tacag--tccatagtaatatattccatttttgtttctt 153  Q
    |||||  | |||||||||||||||||||||||||||||    
T  17698995 tacagtattcatagtaatatattccatttttgtttctt 17698958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 37433745 - 37433613
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||| ||||||    
T  37433745 gagcccgcttctatgtatgggcattgactatctttgatgtaatcttgacagggttgtaatctttttgtgattgttttgatacgtcttgtgctttaacaat 37433646  T
Q  118 taca--gtccatagtaatatattccatttttgt 148  Q
    ||||  ||  |||||||||||||| ||||||||    
T  37433645 tacagtgttgatagtaatatattctatttttgt 37433613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 20823909 - 20823778
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  20823909 gagcccgcttctatgtttgggcattgactatccttgatgtaattttgactgtgttgtaatctttttgtgattgttttggcacgtcttgtgcttcaacaat 20823810  T
Q  118 taca--gtccatagtaatatattccatttttg 147  Q
    ||||  ||   |||||||||||||||||||||    
T  20823809 tacagtgtttttagtaatatattccatttttg 20823778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 2169953 - 2169816
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||| ||||||||||||    
T  2169953 gagcccgcttttatgtatggacatcgattatctttgatgtaattttgacagggttgtgatcttttcgtgattgttatggcacgtcttatgcttcaacaat 2169854  T
Q  118 tac--agtccatagtaatatattccatttttgtttctt 153  Q
    |||   || |||||||||||||||||||||||||||||    
T  2169853 tacggtgttcatagtaatatattccatttttgtttctt 2169816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 43270059 - 43269926
Alignment:
Q  22 ccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattaca 121  Q
    |||||| |||||||| |||| || ||||||||||||||||||||||||||||| ||||||| || |||||| || ||| |||||||||||||||||||||    
T  43270059 ccgcttttatgtatgagcatcgattatctttgatgtaattttgacagggttgtgatcttttcgtaattgttatgacacgtcttgtgcttcaacaattaca 43269960  T
Q  122 --gtccatagtaatatattccatttttgtttctt 153  Q
      || |||||||||||||||||||||||||||||    
T  43269959 gtgttcatagtaatatattccatttttgtttctt 43269926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 9922153 - 9922125
Alignment:
Q  80 ttttgtgattgttttggcacatcttgtgc 108  Q
    |||||||||||||||||||||||||||||    
T  9922153 ttttgtgattgttttggcacatcttgtgc 9922125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 11000477 - 11000614
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||| |||||||| |||| || |||||||||||||||||||||||| |||| ||||||||||||||||| || ||| |||||||||||||||||    
T  11000477 gagcccgcttttatgtatgagcatcgattatctttgatgtaattttgacaggattgtgatctttttgtgattgttatgacacgtcttgtgcttcaacaat 11000576  T
Q  118 tac--agtccatagtaatatattccatttttgtttctt 153  Q
    |||   || |||||||||||||||||||||||||||||    
T  11000577 tacggtgttcatagtaatatattccatttttgtttctt 11000614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 14439366 - 14439232
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||| ||  ||||||||| || |||||||||||||||||||   ||||||| ||||||| ||||||||| |||||| |||||||||||||||||    
T  14439366 gagcccgcttttaattatgggcatcgattatctttgatgtaattttg---gggttgtgatcttttcgtgattgttatggcacgtcttgtgcttcaacaat 14439270  T
Q  118 tac--agtccatagtaatatattccatttttgtttctt 153  Q
    |||   || |||||||||||||||||||||||||||||    
T  14439269 tacggtgttcatagtaatatattccatttttgtttctt 14439232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 18530123 - 18529986
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||||| |||||||| |||| || ||||||||||||||||||||||||||||| ||||||| || |||||| || ||| | |||||||||||||||    
T  18530123 gagcccgcttttatgtatgtgcatcgattatctttgatgtaattttgacagggttgtgatcttttcgtaattgttatgacacgttttgtgcttcaacaat 18530024  T
Q  118 tac--agtccatagtaatatattccatttttgtttctt 153  Q
    |||   || |||||||||||||||||||||||||||||    
T  18530023 tacggtgttcatagtaatatattccatttttgtttctt 18529986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 37254371 - 37254234
Alignment:
Q  18 gagcccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaat 117  Q
    |||||||| | |||||||||| || || |  ||||||||||||||||||||| || | ||||||| ||||||||| |||||| | ||| ||||||| |||    
T  37254371 gagcccgcatttatgtatgggtatcgattgactttgatgtaattttgacaggattttgatcttttcgtgattgttatggcacgttttgggcttcaataat 37254272  T
Q  118 tacag--tccatagtaatatattccatttttgtttctt 153  Q
    ||| |  | |||||||||||||||||||||||||||||    
T  37254271 tacggttttcatagtaatatattccatttttgtttctt 37254234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 25619069 - 25618935
Alignment:
Q  21 cccgcttctatgtatgggcattgactatctttgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac 120  Q
    ||||||| |||||||||| || || |  ||||||||||||| ||||||| || | ||||||| ||||||| | || ||| ||||||||||||||||||||    
T  25619069 cccgcttttatgtatgggtatcgattgactttgatgtaattctgacaggattttgatcttttcgtgattggtatgacacgtcttgtgcttcaacaattac 25618970  T
Q  121 --agtccatagtaatatattccatttttgtttctt 153  Q
       ||  ||||||||||||||||||||||||||||    
T  25618969 gttgtttatagtaatatattccatttttgtttctt 25618935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 23911374 - 23911298
Alignment:
Q  76 atctttttgtgattgttttggcacatcttgtgcttcaacaattaca--gtccatagtaatatattccatttttgttt 150  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| |  ||   |||||||||||| |||||||||||    
T  23911374 atctttttgtgattgttttggcacgtcttgtgtttcaacaattatagtgtttttagtaatatatttcatttttgttt 23911298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 7395 - 7474
Alignment:
Q  76 atctttttgtgattgttttggcacatcttgtgcttcaacaattaca--gtccatagtaatatattccatttttgtttctt 153  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  || |||| ||||||||| ||||||||||||||    
T  7395 atctttttgtgattgttttggcacgtcttgtgcttcaacaattacagtgttcataataatatatttcatttttgtttctt 7474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 16865 - 16968
Alignment:
Q  52 tgatgtaattttgacagggttgtaatctttttgtgattgttttggcacatcttgtgcttcaacaattac--agtccatagtaatatattccatttttgtt 149  Q
    |||||||||| ||||||| || | ||||||| |||||||||  ||||| ||||||||||||||||||||   || |||||||||||||||||||||||||    
T  16865 tgatgtaattctgacaggattttgatcttttcgtgattgttacggcacgtcttgtgcttcaacaattacggtgttcatagtaatatattccatttttgtt 16964  T
Q  150 tctt 153  Q
    ||||    
T  16965 tctt 16968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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