View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18756_high_2 (Length: 463)
Name: NF18756_high_2
Description: NF18756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18756_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 69 - 455
Target Start/End: Original strand, 25446024 - 25446410
Alignment:
| Q |
69 |
ttataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatc |
168 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25446024 |
ttataggtgtactgagaacaaatccttcctaattacactatgacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatc |
25446123 |
T |
|
| Q |
169 |
aactgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgca |
268 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25446124 |
aattgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgca |
25446223 |
T |
|
| Q |
269 |
tttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatacagcagaaatatattagcctttgttattttatatggtatca |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || |||||||||| |
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| T |
25446224 |
tttgattaccttgtaaagcttggacagctataaagccttgtacaaccgtgtgtaaaatatagcagaaatatattagcctttgttaattattatggtatca |
25446323 |
T |
|
| Q |
369 |
gttttgccatttgcttaacagcatatcctttattttcgatccaaccatgaccacttcatcctccaccactactaccaatttcatatc |
455 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25446324 |
gttttgccatttgcttaacagcataccctttattttcgatccaaccatgaccacttcatcatccaccactactaccaatttcatatc |
25446410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 70 - 353
Target Start/End: Original strand, 25450588 - 25450871
Alignment:
| Q |
70 |
tataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatca |
169 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450588 |
tataggtgtactgagaacaaatccttcctaattacactatgacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatca |
25450687 |
T |
|
| Q |
170 |
actgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcat |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450688 |
actgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcat |
25450787 |
T |
|
| Q |
270 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25450788 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25450871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 70 - 455
Target Start/End: Original strand, 31901329 - 31901716
Alignment:
| Q |
70 |
tataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatca |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31901329 |
tataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttatgatca |
31901428 |
T |
|
| Q |
170 |
actgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcat |
269 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31901429 |
actgtcattagtcagtaaagttgacttaccttattcatgtacaattgttttgctctactgtaattcccattcaatgcatttaattattatgtaaatgcat |
31901528 |
T |
|
| Q |
270 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttatatggtatc |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
31901529 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaagatatagcataaatatattagcctttgttattttatatggtata |
31901628 |
T |
|
| Q |
368 |
agttttgccatttgcttaacagcatatcctttattttcgatccaaccatgaccacttcatcctccaccactactaccaatttcatatc |
455 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31901629 |
agttttaccatttgcttaacagcatatcctttatttttgatccaaccatgaccacttcatcctccaccactgctaccaatttcatatc |
31901716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 113 - 358
Target Start/End: Original strand, 31925239 - 31925485
Alignment:
| Q |
113 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgtaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31925239 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacagttgacttaccttattcatgtaca |
31925338 |
T |
|
| Q |
213 |
attgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtaca |
312 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31925339 |
attgttttgctctactgtaattccaa-tcaataaatttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtaca |
31925437 |
T |
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| Q |
313 |
gccgtgtgtaaa--atacagcagaaatatattagcctttgttatttta |
358 |
Q |
| |
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||||||||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
31925438 |
accgtgtgtaaaagatatagcataaatatattagcctttgttatttta |
31925485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 70 - 360
Target Start/End: Complemental strand, 2607125 - 2606833
Alignment:
| Q |
70 |
tataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatca |
169 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2607125 |
tataggcgtactgagaacaaatccatcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatca |
2607026 |
T |
|
| Q |
170 |
actgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcat |
269 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2607025 |
attgtcattagttagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattccaattcaatgcatttaattattatgtaaatgcat |
2606926 |
T |
|
| Q |
270 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
360 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
2606925 |
ttgattaccttgtaaagcttggacatctataaagccttgtacagccatgtgtaaaatatatagcagaaatatattagcctttgttattttata |
2606833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 31137856 - 31137826
Alignment:
| Q |
40 |
aacctttcggttttctgaaaatgtggacttt |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31137856 |
aacctttcggttttctgaaaatgtggacttt |
31137826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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