View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18756_low_4 (Length: 439)
Name: NF18756_low_4
Description: NF18756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18756_low_4 |
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| [»] scaffold2177 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 30576701 - 30577113
Alignment:
| Q |
11 |
acatcatcatagaaaaatattcagtgaggtaaaatcacgaagatggcctgatgatcatcacagctaacttagggggnnnnnnnncctcaaaccaacttag |
110 |
Q |
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| T |
30576701 |
acatcataatagaaaaatattcagtgagggaaaatcacgaagatggcctgatgatcatcacagctaacttagggggaaaaaaaacctcaaaccaacttag |
30576800 |
T |
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| Q |
111 |
tctggtttaagaatatcaagaaacttgtaacgcccccactagatgttgatatcaagagttgagtatccaaattgtnnnnnnngaaccgcattcataaaag |
210 |
Q |
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| T |
30576801 |
tctggtttaagaatatcaagaaacttgtaacgcccccactagatgttgatatcaagagttgagtatccaaattgtaaaaaaagaaccgcattcataaaag |
30576900 |
T |
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| Q |
211 |
aaaggatcgaattaaagaataaatggctcaacagattgagaatgaattaatgttcctatctgctaatattctaatgtgagaattggtgagggttagctta |
310 |
Q |
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| T |
30576901 |
aaaggatcaaattaaagaataaatggctcaacagattgagaatgaattaatgttcctatctgctaatattctaatgtgagaattggtgagggttagctta |
30577000 |
T |
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| Q |
311 |
atataaatagagaattaccactattctatatgactactaggatttatatactactataatagtaactgtttgccttactgagtataaagtatagaccgac |
410 |
Q |
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| T |
30577001 |
atatcaatagagaattaccactattctatatgactactaggatttatatacgactataatagtaactgtttgccttactgagtataaattatagaccgac |
30577100 |
T |
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| Q |
411 |
tccagctacagtt |
423 |
Q |
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| T |
30577101 |
tccagctacagtt |
30577113 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 9783336 - 9783270
Alignment:
| Q |
237 |
ctcaacagattgagaatgaatt--aatgttcctatctgctaatattctaatgtgagaattggtgagg |
301 |
Q |
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| T |
9783336 |
ctcagcagattgagaaagaattaaaatgttcatatctgccaatattctaaggtgagcattggtgagg |
9783270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2177 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold2177
Description:
Target: scaffold2177; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 730 - 664
Alignment:
| Q |
276 |
atattctaatgtgagaattggtgaggg-ttagcttaatataaatagagaattaccactattctatat |
341 |
Q |
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| T |
730 |
atattctaatctgagaattggggaggcattagcttaatatcaattgagagttaccaatattctatat |
664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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