View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18756_low_5 (Length: 347)
Name: NF18756_low_5
Description: NF18756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18756_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 49957518 - 49957836
Alignment:
| Q |
29 |
tgtaatataatccatttactcaacatttataatcnnnnnnnagaaaataacttcattacatgacttccggatcaaccacactacaaaatgccataatcaa |
128 |
Q |
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| T |
49957518 |
tgtaatataatccatttactcaacatttataatctttttttagaaaataacttcattacatgacttccggatcaaccacactacaaaatgccaaaatcaa |
49957617 |
T |
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| Q |
129 |
aggtaaacaatttccatgtcgggagccacttccaaaggaacaaaaaacatagaataaacaaaacaatccgaaggtcctagtcagctcccaccaaaaccca |
228 |
Q |
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| T |
49957618 |
aggtaaacaatttccaagtcgggagccacttccaaaggaacaaaaaacatagaataaacaaaacaatccgaaggtcatagtcagcttccaccaaaaccca |
49957717 |
T |
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| Q |
229 |
tcaaattagccggttatcggatacgatacaaagttttgaagnnnnnnnngaacgtaatatgatccatttgttccacttttatcatctttttctacaaaat |
328 |
Q |
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| T |
49957718 |
tcaaattagccggttattggataagatacaaagttttgaagaaaaaaaagaacgtaatatgatccatttgttcaacgtttataatctttttctagaaaat |
49957817 |
T |
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| Q |
329 |
cactccattacacgacttc |
347 |
Q |
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|||| ||||||| |||||| |
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| T |
49957818 |
cacttcattacatgacttc |
49957836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 49957771 - 49957967
Alignment:
| Q |
30 |
gtaatataatccatttactcaacatttataatcnnnnnnnagaaaataacttcattacatgacttccggatcaaccacactacaaaatgccataatcaaa |
129 |
Q |
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||||||| |||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||| || ||||||| |
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| T |
49957771 |
gtaatatgatccatttgttcaacgtttataatctttttctagaaaatcacttcattacatgacttccgcatcaaacacactacaaaatgtcaaaatcaaa |
49957870 |
T |
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| Q |
130 |
ggtaaacaatttccatgtcgggagccacttccaaaggaacaaaaaacatagaataaacaaaacaatccgaaggtcctagtcagctcccaccaaaacc |
226 |
Q |
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|||||||||||| || |||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
49957871 |
ggtaaacaattttcaagtcgggagccacctccaaaggaacaaaaaatatagaataaacaaaacaatctgaaggtcatagtcagctcccaccaaaacc |
49957967 |
T |
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