View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_10 (Length: 542)
Name: NF18757_high_10
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_10 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 42 - 523
Target Start/End: Original strand, 59705 - 60186
Alignment:
| Q |
42 |
agaatataaggaatagttatgcctcttggttgatgagaaaattgaacaactctaaactttactaccacaaataaaggtctgtttgtgtaaaagtataggt |
141 |
Q |
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| T |
59705 |
agaatataaggaatagttatgcctcttggttgatgagaaaattgaacaactctaaactttactaccacaaataaaggtctgtttgtgtaaaagtataggt |
59804 |
T |
|
| Q |
142 |
atatgccagctcacacaaagtacaagttgcctcatattgtcatctcaatctaaaagctccatggataagctagcttatggtacaagcgtgccaattaaac |
241 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59805 |
atatgccagctcacacaaagtacaagtttcctcatattgtcatctcaatctaaaagctccatggataagctagcttatggtacaagcgtgccaattaaac |
59904 |
T |
|
| Q |
242 |
ccaatcatacgataataatatcatgaaatgattaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggca |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59905 |
ccaatcatacgataataatatcatgaaatgattaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggca |
60004 |
T |
|
| Q |
342 |
ttgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacac |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60005 |
ttgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacac |
60104 |
T |
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| Q |
442 |
gaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtactt |
523 |
Q |
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| T |
60105 |
gaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaattgggtactt |
60186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 273 - 520
Target Start/End: Complemental strand, 8689063 - 8688816
Alignment:
| Q |
273 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
372 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
8689063 |
ttaccggtggtacgaccactggcgtacagtgaaagaacggcctgaatagcaacatacatagcaggggtattaaaagtctcaaacatgatttgagtcatct |
8688964 |
T |
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| Q |
373 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
472 |
Q |
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| T |
8688963 |
tctcacgattggccttagggttgagaggagcctcagttaaaagcactgggtgttcttctggggcgacacgaagctcattgtagaaggtgtgatgccaaat |
8688864 |
T |
|
| Q |
473 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggta |
520 |
Q |
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| T |
8688863 |
cttttccatgtcatcccagttgctaacgattccatgttcaatggggta |
8688816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 273 - 520
Target Start/End: Original strand, 37051120 - 37051367
Alignment:
| Q |
273 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
372 |
Q |
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||||| |||||||||||||| || || || ||||| || || ||||| || |||||||||||||| | |||||| |||||||||||||| || ||||| | |
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| T |
37051120 |
ttaccagttgtacgaccactcgcataaagggaaagcacagcttgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcattt |
37051219 |
T |
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| Q |
373 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
472 |
Q |
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| T |
37051220 |
tctcacgattagccttaggattaagaggtgcttcagtaagaaggacagggtgttcttcaggagcaacacgaagttcattgtagaaagtatgatgccagat |
37051319 |
T |
|
| Q |
473 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggta |
520 |
Q |
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||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
37051320 |
cttctccatatcatcccaattactaacaatcccatgctcaattgggta |
37051367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 273 - 524
Target Start/End: Complemental strand, 67409 - 67158
Alignment:
| Q |
273 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
372 |
Q |
| |
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|||||||||||||| ||||| || || || ||||| || ||||||||||| ||||||||||| || |||||||| ||||||||||| || || ||||| | |
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| T |
67409 |
ttaccggttgtacggccactagcataaagcgaaagcacagcctgaatggcaacatacatagctggagcattgaaggtctcaaacataatctgagtcattt |
67310 |
T |
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| Q |
373 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
472 |
Q |
| |
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|||||||||||||||| |||||||| || ||||| || | ||||| ||||| ||||| || || |||||||||||||| ||||| || |||||||| || |
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| T |
67309 |
tctcacgattagccttaggattaagtggtgcttcagtgagaagaacaggatgttcttcaggagccacacgaagctcattgtagaaagtgtgatgccagat |
67210 |
T |
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| Q |
473 |
cttttccatgtcatcccaattgctaacaataccatgctcaattgggtacttt |
524 |
Q |
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| T |
67209 |
cttttccatatcatcccagttactaacaattccatgctcaattgggtacttt |
67158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 275 - 517
Target Start/End: Complemental strand, 41387870 - 41387628
Alignment:
| Q |
275 |
accggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttc |
374 |
Q |
| |
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||||||||| ||||||||||| ||||| || |||||||||||||| || |||||||||||||| | ||||| ||||||||||| ||||| ||||| ||| |
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| T |
41387870 |
accggttgttcgaccactggcatagagcgatagaacggcctgaatagcaacatacatagcaggtgtgttgaatgtctcaaacataatttgtgtcattttc |
41387771 |
T |
|
| Q |
375 |
tcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatct |
474 |
Q |
| |
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|||||||||||||||||||| || || ||||| || | | ||| || ||||| || ||||| ||||| || ||||| || ||||||||||||||||||| |
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| T |
41387770 |
tcacgattagcctttggattgagcggtgcttcagtgagcaaaaccgggtgctcctctggggccacacggagttcattgtaaaaggtatgatgccaaatct |
41387671 |
T |
|
| Q |
475 |
tttccatgtcatcccaattgctaacaataccatgctcaattgg |
517 |
Q |
| |
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| |||||||||||||| || || ||||||||||| |||||||| |
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| T |
41387670 |
tctccatgtcatcccagttactcacaataccatgttcaattgg |
41387628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 324 - 511
Target Start/End: Original strand, 1263001 - 1263188
Alignment:
| Q |
324 |
acatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggat |
423 |
Q |
| |
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|||||||| ||||| ||||||||||||| ||||| || ||||||||||| || | ||| || || ||||| || ||||| || || | || || || | |
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| T |
1263001 |
acatacattgcaggcacattgaaagtctcgaacataatctgggtcatcttttctctattggctttaggattgagtggagcctcagtaagaagcacagggt |
1263100 |
T |
|
| Q |
424 |
gctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctc |
511 |
Q |
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| T |
1263101 |
gttcttcgggagcaacacgaagctcattataaaatgtgtgatgccaaatcttttccatatcgtcccagttactaactataccatgctc |
1263188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 279 - 523
Target Start/End: Original strand, 43647576 - 43647820
Alignment:
| Q |
279 |
gttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcac |
378 |
Q |
| |
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|||||||||||||| || ||||| || || || ||||| |||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||| || | |
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| T |
43647576 |
gttgtacgaccacttgcatagagggagaggacagcctggatggccacatacatggcaggcacattgaaggtctcgaacatgatttgggtcatcttttctc |
43647675 |
T |
|
| Q |
379 |
gattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttc |
478 |
Q |
| |
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|| |||||||||||||| ||||| || |||| || ||||| ||||| ||||| || ||||| | ||||| || || || |||||||| ||||| || |
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| T |
43647676 |
tgttggcctttggattaagtggagcctcagttagaagtactgggtgctcctcgggagcaacacgcaattcattgtaaaatgtgtgatgccagatcttctc |
43647775 |
T |
|
| Q |
479 |
catgtcatcccaattgctaacaataccatgctcaattgggtactt |
523 |
Q |
| |
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|||||||||||| || || |||||||| |||||||| |||||||| |
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| T |
43647776 |
catgtcatcccagttactgacaataccgtgctcaatggggtactt |
43647820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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