View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18757_high_13 (Length: 462)
Name: NF18757_high_13
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 15449331 - 15449675
Alignment:
| Q |
17 |
aaatgttaaatgggaactaacctgaggagcaatgacaatgaagccatgagaagcaacatgttgaataagctgagaataaaacgagttcaaaagaagatat |
116 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
15449331 |
aaatgtcaaataagaactaacctgaggtgcaatgacaatgaatccatgagaagcaacatgttgaataagttgagaataaaacgagtttaaaagaagatat |
15449430 |
T |
|
| Q |
117 |
ccatgtagaaaaattagtagtgggaattctccaccttcaataggagttgcaatcaaaagagactttggtggtggaactgatcatcaacatgtagaaaact |
216 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
15449431 |
ccatgtagaaaaagtaaaagtgggaattctccaccttcaataggagtagcaatcaagagagattttggtggtggaactgatca---acatatagaaaact |
15449527 |
T |
|
| Q |
217 |
ttagcacacatgaattatataggatatcatataatagaagagtaaataaaaattgtaccattttgtgcatgtgaacaagaatcaacccttagtagcttag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15449528 |
ttagcacacatgaattatataggatatcatataatagaagagtaaataaaaattgtaccattttgtgcatgtgaacaagaatcaacccttagtagcttag |
15449627 |
T |
|
| Q |
317 |
tggtataattaccagtttcaaaaacattactaacagaagaacacataa |
364 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15449628 |
tggtatagttaccagtttcaaaaacattactaacagaagaacacataa |
15449675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 15443752 - 15443915
Alignment:
| Q |
36 |
acctgaggagcaatgacaatgaagccatgagaagcaacatgttgaataagctgagaataaaacgagttcaaaagaagatatccatgtagaaaaattagta |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| | ||||||||| ||||||| |||| ||| | |
|
|
| T |
15443752 |
acctgaggagcaatgacaatgaagccatgagaagccacatgttggataagctgagaataaaatgagttgtagagaagatatgcatgtaggaaaagtagaa |
15443851 |
T |
|
| Q |
136 |
gtgggaattctccaccttcaataggagttgcaatcaaaagagactttggtggtggaactgatca |
199 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
15443852 |
gtggaaattctccaccttcaataggtgtggcaatcaaaagagatcttggtggtggaactgatca |
15443915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 15449676 - 15449741
Alignment:
| Q |
397 |
ctgaagaatttgatgataagataaacctgtggtgtggtttttatatattcttgtttgattggatat |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15449676 |
ctgaagaatttgatgataagataaacctgtggtgtggtttttatatattcttgtttgattggatat |
15449741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University