View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18757_high_15 (Length: 453)
Name: NF18757_high_15
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_15 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 13996926 - 13997356
Alignment:
| Q |
18 |
attcccgccatggtggcgccacatgccgcaatggcgtgtttatatggaggacttttggccttccgccatattccgtccacaacattgaatcaatttcaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13996926 |
attcccgccatggtggcgccacatgccgcaacggcgtgtttatatggaggacttttggccttccgccatattccgtgcacaacattgaatcaatttcaat |
13997025 |
T |
|
| Q |
118 |
tcaaagttcaaacaacacaaaagccaaataatgcaaactaccttaagaagcactctgtcattatcactaatgtatccattccattcctcaccagaatcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13997026 |
tcaaagttcaaacaacacaaaagccaaataatgcaaactaccttaagaagcactctgtcattatcactaatgtatccattccattcctcaccagaatcat |
13997125 |
T |
|
| Q |
218 |
aattcccatgaaagtctctagttataggagccctgtcatcacacaaaaacaaaagtgtttaattttcattcaccactagtannnnnnnnnnnctttccaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13997126 |
aattcccatgaaagtctctagttataggagccctgtcatcacacaaaaacaaaagtgtttaattttcattcaccactagta--tttttttttctttccaa |
13997223 |
T |
|
| Q |
318 |
acatcaacaaatcacaatcaatcatgtacatgtaacttaataatagtcgcgatgaaagtcaaacatttcaattgaattgacaattacaattgattgaccg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13997224 |
acatcaacaaatcacaatcaatcatgtacatgtaacttaataatagtcgcgatgaaagtcaaacatttcaattgaattgacaattacaattgattgaccg |
13997323 |
T |
|
| Q |
418 |
tgttannnnnnnaaactaaagtatatatatttt |
450 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
13997324 |
tgttatttttttaaactaaagtatatatatttt |
13997356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 48791485 - 48791547
Alignment:
| Q |
24 |
gccatggtggcgccacatgccgcaatggcgtgtttatatggaggacttttggccttccgccat |
86 |
Q |
| |
|
||||||| |||||| | ||| |||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
48791485 |
gccatggaagcgccataggccacaatggtgtgtttatatggtggacttttggcctttcgccat |
48791547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 233901 - 233933
Alignment:
| Q |
32 |
ggcgccacatgccgcaatggcgtgtttatatgg |
64 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
233901 |
ggcgccatatgccgcaatggcgtgtttatatgg |
233933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University