View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_17 (Length: 452)
Name: NF18757_high_17
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 52662998 - 52663419
Alignment:
| Q |
13 |
aaatgcaacaacaaaacacataaatgaatgtcagcttggcaaaacggaatgtcaactaagcaaaactgaatgaaaagtaaaaggaacgcacacacaaaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52662998 |
aaatgcaacaacaaaacacataaatgaatgtcagcttggcaaaacggaatgtcagctaagcaaaactgaatgaaaagcaaaaggaacgcacacacaaaaa |
52663097 |
T |
|
| Q |
113 |
tagaaacgaaaatcagtttggtcgttcaaattttgaatcaaatactacatcaactttctttaatcaatgtttatttatatttgagaccggatggagtact |
212 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
52663098 |
tagaaacgaaaatcagtttgatcgttcaaattttgaatcaaatac---atcaactttctttaat-----tttatttatatttgagaccggatggattact |
52663189 |
T |
|
| Q |
213 |
tatctactcccgaattcagcccagttttattaccacccacaaccttgttcactagctttccttctttcaagaacaggaatgtcggcatagcttcaatttc |
312 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52663190 |
tatctactcccg-------cccagttttattaccacccacaaccttgttcactagctttccttctttcaagaacaggaatgtcggcatagcttcaatttc |
52663282 |
T |
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| Q |
313 |
ccactcctcggcaacagtctgaagaaattatggtaattaatttgaaggattcttagttaaagaaagaaatgttctagatcaatgcttcaggatttaagat |
412 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52663283 |
ccactcctcggcaatagtctgaagaaattatggtaattaatttgaaggattcttagttaaagaaagaaatgttctagatcaatgcttcaggatttaagat |
52663382 |
T |
|
| Q |
413 |
ccaaaaccataataatgtcacgtagtagaataattta |
449 |
Q |
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| T |
52663383 |
ccaaaaccataataatgtcacgtagtagattaattta |
52663419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 377
Target Start/End: Original strand, 52666734 - 52666865
Alignment:
| Q |
246 |
cacccacaaccttgttcactagctttccttctttcaagaacaggaatgtcggcatagcttcaatttcccactcctcggcaacagtctgaagaaattatgg |
345 |
Q |
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|||| |||||||||| ||| || |||||||||||||||||||||||||| |||||||| |||| | |||||||||| |||||||||||||||||||| | |
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| T |
52666734 |
caccgacaaccttgtccacaagttttccttctttcaagaacaggaatgttggcatagcatcaactgcccactcctcagcaacagtctgaagaaattaatg |
52666833 |
T |
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| Q |
346 |
taattaatttgaaggattcttagttaaagaaa |
377 |
Q |
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|| | | ||| |||||||||||||||||||| |
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| T |
52666834 |
caagttaattgcaggattcttagttaaagaaa |
52666865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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