View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18757_high_19 (Length: 419)
Name: NF18757_high_19
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 173 - 403
Target Start/End: Original strand, 42566866 - 42567098
Alignment:
| Q |
173 |
ctgggagacgagttatacttatattcatccctaactcaactctgaatctagaaggtcattcttttgatcctatttggaacaagaagactatttaagacga |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42566866 |
ctgggagacgagttatacttatattcatccctaactcaactctgaatcttgaaggtcattcttttgatcctatttggaacaagaagactatttaagacga |
42566965 |
T |
|
| Q |
273 |
gctcagatagtcaggttgctctgaatctgaaggacaactgaaatcattataaagtgatcattaaattattcctagaagatagaagcgaaagattg--att |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42566966 |
gctcagatagtcaggttgctctgaatctgaaggacaactgaaatcattataaagtgatcattaaattattcctagaagatagaagcgaaagattgatatt |
42567065 |
T |
|
| Q |
371 |
tttgtttttagtatattatcatgtacttatact |
403 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
42567066 |
tttttttttagtatattatcatgtacttatact |
42567098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 42566664 - 42566834
Alignment:
| Q |
1 |
aacatgtagattttaaattctgatttccatatgttgactgatacattaatgcttcaacttatataaatatgttatgtttagcttggttcaatatcactgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42566664 |
aacatgtagattttaaattctgatttccatatgtttactgatacattaatgcttcaacttatataaatatgttatgtttagcttggttcaatatcactgt |
42566763 |
T |
|
| Q |
101 |
tcctatattatttatttggtatagcattctaatttataaggaatcaagtatcacttcaaaagacatccacttctg |
175 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42566764 |
tcctata----ttatttggtatagcattctaatttataaggaatcaagtatcacttcaaaagacatccacttctg |
42566834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 42638087 - 42637918
Alignment:
| Q |
1 |
aacatgtagattttaaattctgatttccatatgttgactgatacattaatgcttcaacttatataaatatgttatgtttagcttggttcaatatcactgt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42638087 |
aacatgtagattttaaatcctgatttccatatgttgactgatacattaatgcttcaacttatataaatatgttatgtttagcttggttcaatatcactgt |
42637988 |
T |
|
| Q |
101 |
tcctatattatttatttggtatagcattctaatttataaggaatcaagtatcacttcaaaagacatccacttct |
174 |
Q |
| |
|
|| |||| |||||||| ||||| ||||||||||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
42637987 |
tcgtata----ttatttgggatagcgttctaatttataaggaatcaaatatcacttcataagacttccacttct |
42637918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 42637885 - 42637785
Alignment:
| Q |
174 |
tgggagacgagttatacttatattcatccctaactcaactctgaatctagaaggtcattcttttgatcctatttggaacaagaagactatttaagacgag |
273 |
Q |
| |
|
||||||| | |||||| ||||||||||| ||||||||||||| || | ||||| ||||||||| ||||||||| |||| ||| || ||||||||||| |
|
|
| T |
42637885 |
tgggagatgtgttatatttatattcatcactaactcaactct-aaagttgaaggccattcttttcatcctatttagaac---aagtctgtttaagacgag |
42637790 |
T |
|
| Q |
274 |
ctcag |
278 |
Q |
| |
|
||||| |
|
|
| T |
42637789 |
ctcag |
42637785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University