View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_high_2 (Length: 784)

Name: NF18757_high_2
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_high_2
NF18757_high_2
[»] chr1 (16 HSPs)
chr1 (10-765)||(9828142-9828896)
chr1 (10-271)||(9755161-9755421)
chr1 (328-544)||(9813574-9813790)
chr1 (14-437)||(9803625-9804065)
chr1 (352-530)||(9824076-9824252)
chr1 (584-729)||(9823927-9824073)
chr1 (564-679)||(9813463-9813579)
chr1 (609-728)||(9707157-9707276)
chr1 (731-765)||(22881565-22881599)
chr1 (733-765)||(48450550-48450582)
chr1 (730-761)||(21365989-21366020)
chr1 (731-765)||(5898204-5898238)
chr1 (731-761)||(22947821-22947851)
chr1 (732-761)||(7918153-7918182)
chr1 (39-80)||(9708599-9708640)
chr1 (732-761)||(37598922-37598951)
[»] scaffold0432 (3 HSPs)
scaffold0432 (75-351)||(7042-7319)
scaffold0432 (422-486)||(6921-6985)
scaffold0432 (41-75)||(7334-7368)
[»] chr8 (4 HSPs)
chr8 (733-766)||(27067231-27067264)
chr8 (733-765)||(11803357-11803389)
chr8 (733-765)||(22652074-22652106)
chr8 (731-761)||(29510231-29510261)
[»] chr4 (8 HSPs)
chr4 (732-765)||(30299016-30299049)
chr4 (732-765)||(30327884-30327917)
chr4 (733-765)||(12884347-12884379)
chr4 (730-765)||(24613627-24613662)
chr4 (731-761)||(3064866-3064896)
chr4 (731-761)||(53381528-53381558)
chr4 (732-761)||(5775303-5775332)
chr4 (732-761)||(40784044-40784073)
[»] chr7 (5 HSPs)
chr7 (733-765)||(1433546-1433578)
chr7 (734-765)||(18035806-18035837)
chr7 (731-761)||(5409769-5409799)
chr7 (731-761)||(35862042-35862072)
chr7 (732-765)||(15680896-15680929)
[»] chr6 (4 HSPs)
chr6 (729-761)||(4878033-4878065)
chr6 (731-761)||(8776906-8776936)
chr6 (731-761)||(17327588-17327618)
chr6 (732-761)||(8805523-8805552)
[»] chr5 (3 HSPs)
chr5 (734-765)||(3966601-3966632)
chr5 (732-761)||(10298641-10298670)
chr5 (732-761)||(14873613-14873642)
[»] chr3 (3 HSPs)
chr3 (734-765)||(34910404-34910435)
chr3 (727-761)||(8842420-8842454)
chr3 (728-761)||(41961574-41961607)
[»] chr2 (1 HSPs)
chr2 (731-761)||(37419845-37419875)
[»] scaffold0475 (1 HSPs)
scaffold0475 (732-761)||(3399-3428)
[»] scaffold0004 (1 HSPs)
scaffold0004 (728-761)||(92913-92946)


Alignment Details
Target: chr1 (Bit Score: 700; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 10 - 765
Target Start/End: Complemental strand, 9828896 - 9828142
Alignment:
Q  10 aagaaaatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcaacaaag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9828896 aagaaaatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatca-caaag 9828798  T
Q  110 tgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggacataatggtgat 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9828797 tgaggaaggaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggacataatggtgat 9828698  T
Q  210 gtcgactctgatttgaataacttacaagatttacaagatcatagcaaggattctgattcgagtgatgcatctgacgaggccattaacttaagtaagatat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9828697 gtcgactctgatttgaataacttacaagatttacaagatcatagcaaggattctgattcgagtgatgcatctgacgagggcattaacttaagtaagatat 9828598  T
Q  310 attccaaaattcagaggaaaaagaagcacaaaattaagtgggaatcggaggttgatatgtgtgcagacttcggaaaggatcaagtgttatgtatgaaggc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9828597 attccaaaattcagaggaaaaagaagcacaaaattaagtgggaatcggaggttgatatgtgtgctgacttcggaaaggatcaagtgttatgtatgaaggc 9828498  T
Q  410 tgtatgtgttctttttcgacagcaaactcctgaggagcagacaaactttgtaacattgaaccgcaacgggcgtggatttagctcttttgatgctgacagg 509  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9828497 tgtatgtgttctttttcgacagcaaactcctgaggagcagacgaactttgtaacattgaaccgcaacgggcgtggatttagctcttttgatgctgacagg 9828398  T
Q  510 tatgcagaaaagttacaattatattaatgcttgtgatgtcataagaatgttgcacttgtgttttcaagaatagccaaactttcattgtcctacttgtcag 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9828397 tatgcagaaaagttacaattatattaatgcttgtgatgtcataagaatgttgcacttgtgttttcaagaatagccaaactttcattgtcctacttgtcgg 9828298  T
Q  610 aaaacacgggaggataaagatgaagttgagcaatcataaaagtttgttatttttcgcgaagttgctattcgtgtcaaacaacattttccgtttattttac 709  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||| ||||||||||||| ||||||||||    
T  9828297 aaaacacgggaggataaagatgaagttgagcaatcatataagtttgttatttttcgtgaagttgctatttgcgtcgaacaacattttccttttattttac 9828198  T
Q  710 ttggtcttgtggtctatgtatacctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9828197 ttggtcttgtggtctatgtagacctatgaagcacggacactcctcggattagacgt 9828142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 9755421 - 9755161
Alignment:
Q  10 aagaaaatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcaacaaag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9755421 aagaaaatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatca-caaag 9755323  T
Q  110 tgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggacataatggtgat 209  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9755322 tgaggaaggaaacttgaaaggttttattgttgatgattttgatttatctggttgtgaagtcacctctagcaagtcacaagatggaggacgtaatggtgat 9755223  T
Q  210 gtcgactctgatttgaataacttacaagatttacaagatcatagcaaggattctgattcgag 271  Q
    || ||||||||||||||| |||  |||||| || | ||||||||||||||||||||||||||    
T  9755222 gtggactctgatttgaatgactcgcaagatataaatgatcatagcaaggattctgattcgag 9755161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 328 - 544
Target Start/End: Complemental strand, 9813790 - 9813574
Alignment:
Q  328 aaaagaagcacaaaattaagtgggaatcggaggttgatatgtgtgcagacttcggaaaggatcaagtgttatgtatgaaggctgtatgtgttctttttcg 427  Q
    |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  9813790 aaaagaagcataaaattaagtgggaatcggaggttgaaatgcgtgcagacttcggaaaggatcctgtgttatgtatgaaggctgtatgtgttctttttcg 9813691  T
Q  428 acagcaaactcctgaggagcagacaaactttgtaacattgaaccgcaacgggcgtggatttagctcttttgatgctgacaggtatgcagaaaagttacaa 527  Q
    ||| |||||| | ||||||||||  |||||||||||||||| || | | ||||||||| ||||||||| |||||||  |||||||||||||||||||||     
T  9813690 acaccaaacttccgaggagcagatgaactttgtaacattgagccccgaagggcgtggacttagctcttgtgatgctagcaggtatgcagaaaagttacat 9813591  T
Q  528 ttatattaatgcttgtg 544  Q
    ||| |||||||||||||    
T  9813590 ttagattaatgcttgtg 9813574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 14 - 437
Target Start/End: Complemental strand, 9804065 - 9803625
Alignment:
Q  14 aaatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctga---------------atcaatagaggact 98  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| || ||| |               ||||||||||||||    
T  9804065 aaatgtgtaagcaaaattcatggtgataaggtcaactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggact 9803966  T
Q  99 tatcaacaaagtgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggac 198  Q
    ||||| ||||| || ||| ||||||  | || |||||| || |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||     
T  9803965 tatca-caaagcgaagaaggaaactttatagattttatcgtcgatgattttgatgtatctagttgtcaagtcacctctagcatgtcccaagatggaggat 9803867  T
Q  199 ataatggtgatgtcgactctgatttgaataacttacaagatttacaagatc---atagcaaggattctgattcgagtgatgcatctgacgaggccattaa 295  Q
     |||||||||||| |||||||||||||||||||  || ||||||||| |||   ||||||| |||||||||||| |  ||| || ||| |||| ||| ||    
T  9803866 gtaatggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatgaggacatgaa 9803767  T
Q  296 cttaagtaagatatattccaaaattcagaggaaaaagaagcacaaaattaagtgggaatcggaggttgatatgtgtgcagacttcggaaaggatcaagtg 395  Q
    |||  | |||||||  ||  |||||| |||||||||||||||||||||||||||||||| ||||||||| |||  |||| | || || |||||||  |||    
T  9803766 ctttggcaagatattctcggaaattctgaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtg 9803667  T
Q  396 ttatgtatgaaggctgtatgtgttctttttcgacagcaaact 437  Q
    ||||||||||||| ||| || | | ||| |||||| ||||||    
T  9803666 ttatgtatgaaggttgtttgcgctatttatcgacaacaaact 9803625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 352 - 530
Target Start/End: Complemental strand, 9824252 - 9824076
Alignment:
Q  352 aatcggaggttgatatgtgtgcagacttcggaaaggatcaagtgttatgtatgaaggctgtatgtgttctttttcgacagcaaactcctgaggagcagac 451  Q
    ||||||||||||| |||  ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  9824252 aatcggaggttgagatgcatgcagacttcggaaaggatcctgtgtaatgtatgaaggctgtatgtgttctttttcgacagcaaacttctgaggagcagat 9824153  T
Q  452 aaactttgtaacattgaaccgcaacgggcgtggatttagctcttttgatgctgacaggtatgcagaaaagttacaatta 530  Q
     |||||||||||||||| | ||||  ||||| |||||||||||||| ||||| |||||| |||||||||||||||||||    
T  9824152 gaactttgtaacattgagctgcaa--ggcgtcgatttagctcttttaatgctaacaggtttgcagaaaagttacaatta 9824076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 584 - 729
Target Start/End: Complemental strand, 9824073 - 9823927
Alignment:
Q  584 caaactttcattgtcctacttgtcagaaaacacgggaggataaagatgaagttgagcaat-cataaaagtttgttatttttcgcgaagttgctattcgtg 682  Q
    |||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||  ||||||||||||||||    
T  9824073 caaactttcgatgtcctatttgtcggaaaacacgggaggataaagatgaagttgagcaattcatataagtttgttatttttcaagaagttgctattcgtg 9823974  T
Q  683 tcaaacaacattttccgtttattttacttggtcttgtggtctatgta 729  Q
    |||||||||| ||||| ||||||||||||||| ||||||| ||||||    
T  9823973 tcaaacaacactttccttttattttacttggttttgtggtatatgta 9823927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 564 - 679
Target Start/End: Complemental strand, 9813579 - 9813463
Alignment:
Q  564 cttgtgttttcaagaatagccaaactttcattgtcctacttgtcagaaaacacgggaggataaagatgaagttgagcaa-tcataaaagtttgttatttt 662  Q
    |||||||||| |||||||  |||||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  9813579 cttgtgtttttaagaatacgcaaactttcgatgtcctatttgtcggaaaacacgggaggataaagatgaagttgagcaattcatataagtttgttatttt 9813480  T
Q  663 tcgcgaagttgctattc 679  Q
    ||| |||||||||||||    
T  9813479 tcgagaagttgctattc 9813463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 609 - 728
Target Start/End: Complemental strand, 9707276 - 9707157
Alignment:
Q  609 gaaaacacgggaggataaagatgaagttgagcaatcataaaagtttgttatttttcgcgaagttgctattcgtgtcaaacaacattttccgtttatttta 708  Q
    |||||||| | ||||||||| | ||||||||||| |||| ||||||||  |||||| ||||||| |  ||| || ||||| ||| ||||| ||||| |||    
T  9707276 gaaaacactgtaggataaaggtaaagttgagcaaccatataagtttgtagtttttctcgaagtttcatttcatgacaaactacaatttccttttatatta 9707177  T
Q  709 cttggtcttgtggtctatgt 728  Q
    ||||||| |||||| |||||    
T  9707176 cttggtcatgtggtgtatgt 9707157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 731 - 765
Target Start/End: Original strand, 22881565 - 22881599
Alignment:
Q  731 acctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||||||||||||||||||    
T  22881565 acctatgaagcacggacactcctcggattagacgt 22881599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 733 - 765
Target Start/End: Original strand, 48450550 - 48450582
Alignment:
Q  733 ctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||||||||||||||||    
T  48450550 ctatgaagcacggacactcctcggattagacgt 48450582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 761
Target Start/End: Original strand, 21365989 - 21366020
Alignment:
Q  730 tacctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||||    
T  21365989 tacctatgaagcacggacactcctcggattag 21366020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 765
Target Start/End: Original strand, 5898204 - 5898238
Alignment:
Q  731 acctatgaagcacggacactcctcggattagacgt 765  Q
    |||||| ||||||||||||||||||||||||||||    
T  5898204 acctataaagcacggacactcctcggattagacgt 5898238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Complemental strand, 22947851 - 22947821
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  22947851 acctatgaagcacggacactcctcggattag 22947821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 761
Target Start/End: Original strand, 7918153 - 7918182
Alignment:
Q  732 cctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||    
T  7918153 cctatgaagcacggacactcctcggattag 7918182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 9708640 - 9708599
Alignment:
Q  39 ataaggtcaactatcagcaaagtattccaacaaatgatgatg 80  Q
    |||||||||| |||||||| |||||||||| |||||||||||    
T  9708640 ataaggtcaagtatcagcagagtattccaaaaaatgatgatg 9708599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 761
Target Start/End: Complemental strand, 37598951 - 37598922
Alignment:
Q  732 cctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||    
T  37598951 cctatgaagcacggacactcctcggattag 37598922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 128; Significance: 9e-66; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 75 - 351
Target Start/End: Complemental strand, 7319 - 7042
Alignment:
Q  75 atgatgctgaatcaatagaggacttatcaacaaagtgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacct 174  Q
    ||||||||| ||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||||| |||    
T  7319 atgatgctggatcaatagaggacttatca-caaagtgaagaaggaaacttgaaaggttttattgttgatgattttgatatatctagctgtgaagtcgcct 7221  T
Q  175 ctagcaagtcacaagatg--gaggacataatggtgatgtcgactctgatttgaataacttacaagatttacaagatcatagcaaggattctgattcgagt 272  Q
    |||||||||||||||| |  |||||| ||| |||||||| ||||||||||| ||| |||  || ||||||||||||||| ||||||||||| |||||       
T  7220 ctagcaagtcacaagaaggagaggacgtaacggtgatgtggactctgatttaaatgactcgcatgatttacaagatcatggcaaggattctaattcgcac 7121  T
Q  273 gatgcatctgacgaggccattaacttaagtaagatatattccaaaattcagaggaaaaagaagcacaaaattaagtggg 351  Q
     ||| |||||| |||| |||||||||  |||||| ||  || |||||||||||||||| ||||||||||||||| ||||    
T  7120 aatgtatctgatgaggacattaactttggtaagaaattatctaaaattcagaggaaaaggaagcacaaaattaattggg 7042  T

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Target: scaffold0432; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 422 - 486
Target Start/End: Complemental strand, 6985 - 6921
Alignment:
Q  422 ttttcgacagcaaactcctgaggagcagacaaactttgtaacattgaaccgcaacgggcgtggat 486  Q
    ||||||||||||||||  |||||||||||  ||||||||||| |||| |||||||||||||||||    
T  6985 ttttcgacagcaaacttgtgaggagcagatgaactttgtaactttgagccgcaacgggcgtggat 6921  T

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Target: scaffold0432; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 7368 - 7334
Alignment:
Q  41 aaggtcaactatcagcaaagtattccaacaaatga 75  Q
    |||||||||||||| ||||||||||||||||||||    
T  7368 aaggtcaactatcatcaaagtattccaacaaatga 7334  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 733 - 766
Target Start/End: Original strand, 27067231 - 27067264
Alignment:
Q  733 ctatgaagcacggacactcctcggattagacgtt 766  Q
    ||||||||||||||||||||||||||||||||||    
T  27067231 ctatgaagcacggacactcctcggattagacgtt 27067264  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 733 - 765
Target Start/End: Complemental strand, 11803389 - 11803357
Alignment:
Q  733 ctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||||||||||||||||    
T  11803389 ctatgaagcacggacactcctcggattagacgt 11803357  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 733 - 765
Target Start/End: Complemental strand, 22652106 - 22652074
Alignment:
Q  733 ctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||||||||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgt 22652074  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Original strand, 29510231 - 29510261
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  29510231 acctatgaagcacggacactcctcggattag 29510261  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 732 - 765
Target Start/End: Complemental strand, 30299049 - 30299016
Alignment:
Q  732 cctatgaagcacggacactcctcggattagacgt 765  Q
    ||||||||||||||||||||||||||||||||||    
T  30299049 cctatgaagcacggacactcctcggattagacgt 30299016  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 732 - 765
Target Start/End: Complemental strand, 30327917 - 30327884
Alignment:
Q  732 cctatgaagcacggacactcctcggattagacgt 765  Q
    ||||||||||||||||||||||||||||||||||    
T  30327917 cctatgaagcacggacactcctcggattagacgt 30327884  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 733 - 765
Target Start/End: Original strand, 12884347 - 12884379
Alignment:
Q  733 ctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||||||||||||||||    
T  12884347 ctatgaagcacggacactcctcggattagacgt 12884379  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 765
Target Start/End: Original strand, 24613627 - 24613662
Alignment:
Q  730 tacctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||||||| |||||||||||    
T  24613627 tacctatgaagcacggacactcctaggattagacgt 24613662  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Original strand, 3064866 - 3064896
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  3064866 acctatgaagcacggacactcctcggattag 3064896  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Original strand, 53381528 - 53381558
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  53381528 acctatgaagcacggacactcctcggattag 53381558  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 761
Target Start/End: Original strand, 5775303 - 5775332
Alignment:
Q  732 cctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||    
T  5775303 cctatgaagcacggacactcctcggattag 5775332  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 761
Target Start/End: Complemental strand, 40784073 - 40784044
Alignment:
Q  732 cctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||    
T  40784073 cctatgaagcacggacactcctcggattag 40784044  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 733 - 765
Target Start/End: Complemental strand, 1433578 - 1433546
Alignment:
Q  733 ctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||||||||||||||||    
T  1433578 ctatgaagcacggacactcctcggattagacgt 1433546  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 765
Target Start/End: Original strand, 18035806 - 18035837
Alignment:
Q  734 tatgaagcacggacactcctcggattagacgt 765  Q
    ||||||||||||||||||||||||||||||||    
T  18035806 tatgaagcacggacactcctcggattagacgt 18035837  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Original strand, 5409769 - 5409799
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  5409769 acctatgaagcacggacactcctcggattag 5409799  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Complemental strand, 35862072 - 35862042
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  35862072 acctatgaagcacggacactcctcggattag 35862042  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 765
Target Start/End: Complemental strand, 15680929 - 15680896
Alignment:
Q  732 cctatgaagcacggacactcctcggattagacgt 765  Q
    |||||||||||||||||||||||| |||||||||    
T  15680929 cctatgaagcacggacactcctcgaattagacgt 15680896  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 729 - 761
Target Start/End: Complemental strand, 4878065 - 4878033
Alignment:
Q  729 atacctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||||    
T  4878065 atacctatgaagcacggacactcctcggattag 4878033  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Original strand, 8776906 - 8776936
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  8776906 acctatgaagcacggacactcctcggattag 8776936  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Original strand, 17327588 - 17327618
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  17327588 acctatgaagcacggacactcctcggattag 17327618  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 761
Target Start/End: Original strand, 8805523 - 8805552
Alignment:
Q  732 cctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||    
T  8805523 cctatgaagcacggacactcctcggattag 8805552  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 765
Target Start/End: Complemental strand, 3966632 - 3966601
Alignment:
Q  734 tatgaagcacggacactcctcggattagacgt 765  Q
    ||||||||||||||||||||||||||||||||    
T  3966632 tatgaagcacggacactcctcggattagacgt 3966601  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 761
Target Start/End: Complemental strand, 10298670 - 10298641
Alignment:
Q  732 cctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||    
T  10298670 cctatgaagcacggacactcctcggattag 10298641  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 761
Target Start/End: Complemental strand, 14873642 - 14873613
Alignment:
Q  732 cctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||    
T  14873642 cctatgaagcacggacactcctcggattag 14873613  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 765
Target Start/End: Complemental strand, 34910435 - 34910404
Alignment:
Q  734 tatgaagcacggacactcctcggattagacgt 765  Q
    ||||||||||||||||||||||||||||||||    
T  34910435 tatgaagcacggacactcctcggattagacgt 34910404  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 727 - 761
Target Start/End: Complemental strand, 8842454 - 8842420
Alignment:
Q  727 gtatacctatgaagcacggacactcctcggattag 761  Q
    ||||| |||||||||||||||||||||||||||||    
T  8842454 gtatatctatgaagcacggacactcctcggattag 8842420  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 761
Target Start/End: Original strand, 41961574 - 41961607
Alignment:
Q  728 tatacctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||| ||||||||||    
T  41961574 tatacctatgaagcacggacacttctcggattag 41961607  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Complemental strand, 37419875 - 37419845
Alignment:
Q  731 acctatgaagcacggacactcctcggattag 761  Q
    |||||||||||||||||||||||||||||||    
T  37419875 acctatgaagcacggacactcctcggattag 37419845  T

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Target: scaffold0475 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 761
Target Start/End: Complemental strand, 3428 - 3399
Alignment:
Q  732 cctatgaagcacggacactcctcggattag 761  Q
    ||||||||||||||||||||||||||||||    
T  3428 cctatgaagcacggacactcctcggattag 3399  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 761
Target Start/End: Complemental strand, 92946 - 92913
Alignment:
Q  728 tatacctatgaagcacggacactcctcggattag 761  Q
    ||||| ||||||||||||||||||||||||||||    
T  92946 tatacatatgaagcacggacactcctcggattag 92913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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