View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_21 (Length: 411)
Name: NF18757_high_21
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 41314453 - 41314154
Alignment:
| Q |
18 |
caaagggcaacaaagacgagcggaaatcaatggcagcgaaatgagcaagaatatcatgaagattaacaaagataataatggtaagagcaataagaagaac |
117 |
Q |
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| T |
41314453 |
caaagggcaacaaagacgagcggaaatcaatggcagcaaaatgagcaagaatatcatgaagattaacaaagataataatggtaagagcaataagaagaac |
41314354 |
T |
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| Q |
118 |
aacgaggcccgaacgggcttcaggagaaagctgggccacaaaaccggaacaaaggatcacggtggcaaatagatataggcctgcgtttatgtattcgtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41314353 |
aacgaggcccgaacgggcttcaggagaaagctgggccacaaaaccggaacaaaggatcacggtggcaaatagatataggcctgcgtttatgtattcgtaa |
41314254 |
T |
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| Q |
218 |
cggtttctagtgaggcccgggccgtatgtacggaactctcttgctgaagctagtttcaccattgtctgaaaaggaatgtgtgtgttagtgttgggttggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41314253 |
cggtttctagtgaggcccgggccgtatgtacggaactctcttgctgaagctagtttcaccattgtctgaaaaggaatgtgtgtg-tagtgttgggttggt |
41314155 |
T |
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