View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_high_22 (Length: 398)

Name: NF18757_high_22
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_high_22
NF18757_high_22
[»] chr7 (8 HSPs)
chr7 (152-387)||(5376279-5376514)
chr7 (134-289)||(5368062-5368214)
chr7 (19-113)||(5368284-5368378)
chr7 (174-303)||(36853046-36853175)
chr7 (157-256)||(35169949-35170048)
chr7 (192-306)||(24547662-24547777)
chr7 (181-230)||(46214467-46214516)
chr7 (329-381)||(5367415-5367467)
[»] chr8 (14 HSPs)
chr8 (157-253)||(26819258-26819354)
chr8 (179-236)||(3017471-3017528)
chr8 (165-230)||(26762851-26762916)
chr8 (186-235)||(39560339-39560388)
chr8 (180-232)||(10744257-10744309)
chr8 (157-235)||(30011758-30011836)
chr8 (164-235)||(16527482-16527553)
chr8 (207-302)||(34338653-34338748)
chr8 (190-235)||(2309154-2309200)
chr8 (178-232)||(43059451-43059505)
chr8 (186-235)||(29705899-29705948)
chr8 (238-294)||(4670602-4670657)
chr8 (180-249)||(16168305-16168376)
chr8 (171-235)||(31188874-31188938)
[»] chr6 (6 HSPs)
chr6 (171-251)||(733580-733662)
chr6 (179-236)||(18361298-18361355)
chr6 (185-230)||(31650307-31650352)
chr6 (178-257)||(8782972-8783051)
chr6 (171-234)||(25094709-25094772)
chr6 (165-234)||(7952307-7952376)
[»] chr5 (8 HSPs)
chr5 (185-264)||(36261960-36262039)
chr5 (183-302)||(35035571-35035691)
chr5 (181-232)||(18871012-18871063)
chr5 (185-235)||(36639769-36639819)
chr5 (185-251)||(16230759-16230827)
chr5 (164-228)||(16215390-16215454)
chr5 (184-235)||(16962198-16962248)
chr5 (158-248)||(7705307-7705397)
[»] chr2 (5 HSPs)
chr2 (165-300)||(10231799-10231935)
chr2 (180-277)||(9529506-9529600)
chr2 (180-234)||(5129658-5129712)
chr2 (178-215)||(35991377-35991414)
chr2 (182-234)||(44250661-44250713)
[»] chr1 (6 HSPs)
chr1 (157-249)||(14303921-14304015)
chr1 (218-300)||(16979581-16979664)
chr1 (157-235)||(24126880-24126957)
chr1 (194-228)||(32408099-32408133)
chr1 (165-218)||(15867621-15867674)
chr1 (181-306)||(34796781-34796907)
[»] chr4 (3 HSPs)
chr4 (165-234)||(1132154-1132223)
chr4 (165-235)||(10997329-10997399)
chr4 (172-225)||(18966004-18966057)
[»] chr3 (5 HSPs)
chr3 (178-236)||(48183708-48183765)
chr3 (189-251)||(48553069-48553131)
chr3 (186-235)||(38900006-38900055)
chr3 (185-230)||(43220827-43220872)
chr3 (180-249)||(44009252-44009323)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 152 - 387
Target Start/End: Original strand, 5376279 - 5376514
Alignment:
Q  152 gtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  5376279 gtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcgcacatggttggttgtgatttt 5376378  T
Q  252 ctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactcattatttaaaacacgtcttttaatcattcatttagtttactcttagtcgac 351  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5376379 ctaatgttgtaaagcctttttacactgacaatatatcaaaattaaactcattatttaaaacacgtcttttaatcattcatttagtttattcttagtcgac 5376478  T
Q  352 atgagactgctcactcacttgtatttcaaaacctat 387  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5376479 atgagactgttcactcacttgtatttcaaaacctat 5376514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 134 - 289
Target Start/End: Complemental strand, 5368214 - 5368062
Alignment:
Q  134 aattcagataaattgtcggtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac 233  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||   || ||||||||||||||      
T  5368214 aattcatataaattgtcagtgtattacacgttcaatgaatcatgatcatcagatcattaaaaacgtttggctgtaatc---acaacttctaaagtcacga 5368118  T
Q  234 atggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatca 289  Q
    ||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  5368117 atgattggttgtgattttctgatgctgtaaagcctttttacactgacaatatatca 5368062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 5368378 - 5368284
Alignment:
Q  19 catggatgtttcataccttagttctcaactcatttctagttacagtaaagaacttcaggtttgtctctattcatgattaggtgtctttaatattt 113  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  5368378 catggatgtttcataccttagttctcaagtgatttctagttacagtaaagaacttcaggtttgtctctattgatgattaggttcctttaatattt 5368284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 36853175 - 36853046
Alignment:
Q  174 catgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttt 271  Q
    |||||| ||||||||| ||||||  ||||| | |||||||||||||||||||||||||||  ||| ||||||||||||| |||||  ||||||  |||||    
T  36853175 catgatagtcagatcaataaaaatatttgattataatcataactacttctaaagtcacacatatgattggttgtgatttactgacaatgtaaa--ctttt 36853078  T
Q  272 tacactgacaatatatcaaaattaaactcatt 303  Q
    || || |||| | |||||||||||||||||||    
T  36853077 tataccgacagtgtatcaaaattaaactcatt 36853046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 35169949 - 35170048
Alignment:
Q  157 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgctgac 256  Q
    ||||||| ||||| |||  | ||||| |||| |||||| | |||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  35169949 ttacactgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaagtcacacatgattggttatgatttgttgac 35170048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 24547777 - 24547662
Alignment:
Q  192 aaaaacgtttgactgtaatcataactacttctaaagtcac--acatggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatca 289  Q
    ||||| ||||||||  ||||||||||||||||||| ||||  | ||| |||||||||||||  ||||  ||||||  ||||||||||||||  | |||||    
T  24547777 aaaaatgtttgacttcaatcataactacttctaaaatcacagatatgattggttgtgatttattgacagtgtaaa-actttttacactgacggtgtatca 24547679  T
Q  290 aaattaaactcattatt 306  Q
    || | |||||| |||||    
T  24547678 aattcaaactctttatt 24547662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 46214467 - 46214516
Alignment:
Q  181 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca 230  Q
    |||||||||| |||||||||||||| ||||||| |  |||||||||||||    
T  46214467 gtcagatcataaaaaacgtttgactttaatcattatgacttctaaagtca 46214516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 5367467 - 5367415
Alignment:
Q  329 catttagtttactcttagtcgacatgagactgctcactcacttgtatttcaaa 381  Q
    ||||||||||| |||||||||||||  |||| |  ||||||||||||||||||    
T  5367467 catttagtttattcttagtcgacattggactacctactcacttgtatttcaaa 5367415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 26819258 - 26819354
Alignment:
Q  157 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgct 253  Q
    |||||| |||||| ||| |  ||||| ||||||||||||| |||||||| | |||  ||||||||||||||||||||||| ||||||||||||||||    
T  26819258 ttacacattcaatcaattacaatcgttagatcattaaaaatgtttgacttttatcgcaactacttctaaagtcacacatgattggttgtgatttgct 26819354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 3017528 - 3017471
Alignment:
Q  179 tcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 236  Q
    |||||||||||||||||| |||||||| |||||||||||||||  |||||||||||||    
T  3017528 tcgtcagatcattaaaaaagtttgactttaatcataactactttgaaagtcacacatg 3017471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 26762851 - 26762916
Alignment:
Q  165 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca 230  Q
    ||||| |||||| ||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  26762851 tcaatcaatcataatcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtca 26762916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 39560388 - 39560339
Alignment:
Q  186 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  39560388 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 39560339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 10744257 - 10744309
Alignment:
Q  180 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 232  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||||||||||||    
T  10744257 cgtcacatcattaaaaacgtttgactttaattataactgcttctaaagtcaca 10744309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 30011836 - 30011758
Alignment:
Q  157 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    ||||||| ||||| ||||||  | |||| | ||||||||| ||||||||  ||||||||||||||||||| ||||||||    
T  30011836 ttacactgtcaatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttctaaaatcacacat 30011758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 16527553 - 16527482
Alignment:
Q  164 ttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    |||||| |||| | ||| |||||||||||| ||||||||| | || || |||||||||||||||||| ||||    
T  16527553 ttcaatcaatcgtaatcatcagatcattaagaacgtttgagtttagtcgtaactacttctaaagtcatacat 16527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 34338748 - 34338653
Alignment:
Q  207 taatcataactacttctaaagtcacacatggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactcat 302  Q
    ||||||||||||||| |||||||||||||| || ||||| |||   ||||| |||||    ||||||||| |||| | |||||||||| |||||||    
T  34338748 taatcataactacttttaaagtcacacatgatttgttgtcattccttgacgatgtaacatttttttacacggacagtgtatcaaaattgaactcat 34338653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 2309154 - 2309200
Alignment:
Q  190 ttaaaaacgtttgactgtaatc-ataactacttctaaagtcacacat 235  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  2309154 ttaaaaacatttggctgtaatcgataactacttctaaagtcacacat 2309200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 43059451 - 43059505
Alignment:
Q  178 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 232  Q
    ||||||| ||||| |||||  ||||||| |||| |||||||||||||||||||||    
T  43059451 atcgtcaaatcatcaaaaaactttgactttaataataactacttctaaagtcaca 43059505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 29705899 - 29705948
Alignment:
Q  186 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||| ||||    
T  29705899 atcattataaacgtttgacttttatcataaccacttctaaagtcatacat 29705948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 4670657 - 4670602
Alignment:
Q  238 ttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaatt 294  Q
    |||||||||||||| ||||  |||||| | ||||||||||||| |||||||||||||    
T  4670657 ttggttgtgatttgttgaccatgtaaaac-tttttacactgacgatatatcaaaatt 4670602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 16168305 - 16168376
Alignment:
Q  180 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt--cacacatggttggttgtgatt 249  Q
    ||||| |||||||||||| ||||||| ||||||| |||| |  ||||||  |||||||| ||||||||||||    
T  16168305 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacacacatgattggttgtgatt 16168376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 31188874 - 31188938
Alignment:
Q  171 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    |||||| || |||||||||||| ||| |||| |||  |||||||| |||||| ||||||||||||    
T  31188874 aatcataattgtcagatcattacaaatgtttaacttcaatcataattacttcgaaagtcacacat 31188938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 733580 - 733662
Alignment:
Q  171 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttg 251  Q
    |||||| | ||| ||||||||||||||||  |||| ||||| |||||||||||||||||||||  ||||||||||||||||||    
T  733580 aatcataaccgttagatcattaaaaacgtccgactttaatcgtaactacttctaaagtcacacgtatggttggttgtgatttg 733662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 18361355 - 18361298
Alignment:
Q  179 tcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 236  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  |||||||||||||    
T  18361355 tcgtcagatcattaaaaacgtttaactttaatcataactactttgaaagtcacacatg 18361298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 31650307 - 31650352
Alignment:
Q  185 gatcattaaaaacgtttgactgtaatcataactacttctaaagtca 230  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||    
T  31650307 gatcattaaaaatgtttgactttaatcataactacttctaaagtca 31650352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 8782972 - 8783051
Alignment:
Q  178 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtc--acacatggttggttgtgatttgctgacg 257  Q
    |||||| ||||||||||||  ||||||| |||||||||||||||| ||||||  | | ||| |||||||||||||| |||||    
T  8782972 atcgtccgatcattaaaaa--tttgactttaatcataactacttcaaaagtcatatatatgattggttgtgatttgttgacg 8783051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 25094772 - 25094709
Alignment:
Q  171 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 234  Q
    |||||| ||||||  ||||||||| | |||||||| ||||||||| ||||| ||||||||||||    
T  25094772 aatcataatcgtctaatcattaaacatgtttgactttaatcataagtacttttaaagtcacaca 25094709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 7952307 - 7952376
Alignment:
Q  165 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 234  Q
    ||||| |||||| | |||| ||||||||||||| ||| ||| | |||||||| |||||||||| ||||||    
T  7952307 tcaatcaatcataaccgtcggatcattaaaaacatttcacttttatcataacaacttctaaagccacaca 7952376  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 36262039 - 36261960
Alignment:
Q  185 gatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgctgacgttgtaaa 264  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| ||  ||| || ||||||||||||| ||||||    
T  36262039 gatcattaaaaacatttggctttaatcataactacttctaaagtcacatataattgtttctgatttgctgacggtgtaaa 36261960  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 35035571 - 35035691
Alignment:
Q  183 cagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttttacactgac 280  Q
    ||||||| ||||||  ||||| | |||||||||||||||||||| ||||||  ||| ||||||||||||| |||||  ||||||   |||||| || |||    
T  35035571 cagatcaataaaaatatttgattttaatcataactacttctaaaatcacacatatgattggttgtgatttactgacaatgtaaa-attttttataccgac 35035669  T
Q  281 aatatatcaaaattaaactcat 302  Q
    | | ||||||||||||||||||    
T  35035670 agtgtatcaaaattaaactcat 35035691  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 18871012 - 18871063
Alignment:
Q  181 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 232  Q
    |||||||||||||| |||||||||  |||| |||||||||||||||||||||    
T  18871012 gtcagatcattaaacacgtttgaccttaatgataactacttctaaagtcaca 18871063  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 36639819 - 36639769
Alignment:
Q  185 gatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    ||||||||| ||||||| | | |||||||||||||||||||||||||||||    
T  36639819 gatcattaagaacgtttcaatttaatcataactacttctaaagtcacacat 36639769  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 16230827 - 16230759
Alignment:
Q  185 gatcattaaaaacgtttgactgtaatcataactacttctaaagtc--acacatggttggttgtgatttg 251  Q
    ||||||| |||| |||||||| |||||||||||||||||||| ||  ||| ||| ||||||||||||||    
T  16230827 gatcatttaaaatgtttgactttaatcataactacttctaaaatcaaacatatgattggttgtgatttg 16230759  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 16215390 - 16215454
Alignment:
Q  164 ttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt 228  Q
    ||||||||||||| || | ||||| |||||||| ||||||||  |||| ||||||||||||||||    
T  16215390 ttcaatgaatcataattgacagattattaaaaatgtttgacttgaatcgtaactacttctaaagt 16215454  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 16962198 - 16962248
Alignment:
Q  184 agatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  16962198 agatcattaaaa-cgtttgactttaatcataactatttctaaagtcgcacat 16962248  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 7705307 - 7705397
Alignment:
Q  158 tacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgat 248  Q
    |||||| ||||| |||||| |  ||||| |||||  |||| ||||||| | |||||||| |||| |||||||||||||| || ||||||||    
T  7705307 tacactgtcaatcaatcataacagtcaggtcattggaaacatttgacttttatcataaccacttttaaagtcacacatgatttgttgtgat 7705397  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 300
Target Start/End: Complemental strand, 10231935 - 10231799
Alignment:
Q  165 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat--ggttggttgtgatttgctgacgttgta 262  Q
    ||||| |||||  ||| |||||||||||||| | ||||||| | |||||||||| ||||||| ||||||||  | ||| |||| || ||  |||  ||||    
T  10231935 tcaatcaatcacaatcatcagatcattaaaatcatttgacttttatcataactatttctaaaatcacacatatgattgattgtaatatgtggacagtgta 10231836  T
Q  263 aagcctttttacactgacaatatatcaaaattaaactc 300  Q
    || | |||||||||||||||||||||||||||||||||    
T  10231835 aaac-tttttacactgacaatatatcaaaattaaactc 10231799  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 9529600 - 9529506
Alignment:
Q  180 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttttacact 277  Q
    ||||| ||||||||||||||||||||    | |||| ||||| |||||||||||  ||| |||||||||||||||||| | ||||||  |||||||||||    
T  9529600 cgtcacatcattaaaaacgtttgact----ttataattacttttaaagtcacacatatgattggttgtgatttgctgatgatgtaaa-actttttacact 9529506  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 5129658 - 5129712
Alignment:
Q  180 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 234  Q
    ||||| ||||| |||||| ||||||  ||||||||| ||||||||||||||||||    
T  5129658 cgtcatatcataaaaaacatttgaccttaatcataaatacttctaaagtcacaca 5129712  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 35991414 - 35991377
Alignment:
Q  178 atcgtcagatcattaaaaacgtttgactgtaatcataa 215  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  35991414 atcgtcagatcattaaaaacgtttgactctaataataa 35991377  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 44250713 - 44250661
Alignment:
Q  182 tcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 234  Q
    |||| |||||||||| |||||  | |||||||||||| |||||||||||||||    
T  44250713 tcagctcattaaaaatgtttgcttttaatcataactatttctaaagtcacaca 44250661  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 14303921 - 14304015
Alignment:
Q  157 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca--cacatggttggttgtgatt 249  Q
    ||||||| ||||| |||||  ||||||||||| ||| ||| |||||||| ||||||||||||||| ||||||||  || ||| ||||||||||||    
T  14303921 ttacactgtcaatcaatcagcatcgtcagatcgttataaaagtttgactttaatcataactacttttaaagtcactcatatgattggttgtgatt 14304015  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 16979664 - 16979581
Alignment:
Q  218 acttctaaagtcacacatg--gttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactc 300  Q
    ||||||||||||||| ||   ||||||||||||||| ||||  |||||| | |||||||||||||| | ||||||||||||||||    
T  16979664 acttctaaagtcacatatattgttggttgtgatttgttgacagtgtaaatc-tttttacactgacagtgtatcaaaattaaactc 16979581  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 24126880 - 24126957
Alignment:
Q  157 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    ||||||| ||||| |||| | ||| |||||||||||||||  ||||||| ||| |||||||||||||||| ||| ||||    
T  24126880 ttacactatcaatcaatcttaatcatcagatcattaaaaaa-tttgactttaaacataactacttctaaaatcaaacat 24126957  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 32408099 - 32408133
Alignment:
Q  194 aaacgtttgactgtaatcataactacttctaaagt 228  Q
    |||||||||||| ||||||||||||||||||||||    
T  32408099 aaacgtttgactttaatcataactacttctaaagt 32408133  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 15867674 - 15867621
Alignment:
Q  165 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataacta 218  Q
    ||||| |||||| ||||||| ||||||||||  |||||||| ||||||||||||    
T  15867674 tcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataacta 15867621  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 306
Target Start/End: Complemental strand, 34796907 - 34796781
Alignment:
Q  181 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat--ggttggttgtgatttgctgacgttgtaaagcctttttacactg 278  Q
    |||| ||||||||| | |||||| | | |||||||||| |||||| || || |||  |||||||||| || ||||||| |||||||  |||||| || ||    
T  34796907 gtcatatcattaaacatgtttgaattttatcataactaattctaacgtaactcatatggttggttgtcatatgctgacattgtaaa-actttttgcagtg 34796809  T
Q  279 acaatatatcaaaattaaactcattatt 306  Q
    ||| | ||| |||||||| |||||||||    
T  34796808 acagtgtatgaaaattaagctcattatt 34796781  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 1132154 - 1132223
Alignment:
Q  165 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 234  Q
    ||||| |||||| | ||||||||||||| |||| ||||||| | |||||||||| |||||||| ||||||    
T  1132154 tcaatcaatcataaccgtcagatcattagaaacatttgacttttatcataactaattctaaagacacaca 1132223  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 10997399 - 10997329
Alignment:
Q  165 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    ||||| |||||| ||||| | ||||||||||||||  |||| |||||||| ||| ||||||||| ||||||    
T  10997399 tcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctatttctaaagttacacat 10997329  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 18966057 - 18966004
Alignment:
Q  172 atcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaa 225  Q
    ||||| ||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  18966057 atcataatcgtcatatcattaaaaatgtttgactttaatcgtaactaattctaa 18966004  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 48183708 - 48183765
Alignment:
Q  178 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 236  Q
    ||||||||||||| ||||||||||||  || | ||| ||||||||||||||||||||||    
T  48183708 atcgtcagatcat-aaaaacgtttgaaagtcaacatgactacttctaaagtcacacatg 48183765  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 48553131 - 48553069
Alignment:
Q  189 attaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttg 251  Q
    ||||||||| ||||| | |||||||||  ||||||||||||||| ||| ||| ||||||||||    
T  48553131 attaaaaacatttgaatttaatcataaaaacttctaaagtcacatatgattgattgtgatttg 48553069  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 38900006 - 38900055
Alignment:
Q  186 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 235  Q
    ||||||||||||||||||||   ||| ||||||||| |||||||||||||    
T  38900006 atcattaaaaacgtttgacttgtatcctaactacttttaaagtcacacat 38900055  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 43220872 - 43220827
Alignment:
Q  185 gatcattaaaaacgtttgactgtaatcataactacttctaaagtca 230  Q
    ||||| ||||||||||||||| |||||||||  |||||||||||||    
T  43220872 gatcaataaaaacgtttgactttaatcataatcacttctaaagtca 43220827  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 44009323 - 44009252
Alignment:
Q  180 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt--cacacatggttggttgtgatt 249  Q
    ||||| |||||||||||| ||||||| ||||||| |||| |  ||||||  |||||||| ||||||||||||    
T  44009323 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacacacatgattggttgtgatt 44009252  T

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