View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_29 (Length: 366)
Name: NF18757_high_29
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_29 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 47782176 - 47781845
Alignment:
| Q |
18 |
atacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatactaagttgatctgccattgttgcgttgttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47782176 |
atacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaatagttgtgttactaagatactaagttgatctgccattgttgcgttgttc |
47782077 |
T |
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| Q |
118 |
gagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47782076 |
gagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattg |
47781977 |
T |
|
| Q |
218 |
cttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtcttgaggattaatgtctcctctacatattccaat |
317 |
Q |
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| T |
47781976 |
cttcttttttgtttggacatgcttgtgtgagattgaatctggaacctattaggcatttgcgacagtcttgaggattaatgtctcctctacatattccaat |
47781877 |
T |
|
| Q |
318 |
gacgtttactttgtcattgttttggccatagt |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47781876 |
gacgtttactttgtcattgttttggccatagt |
47781845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 47788390 - 47788059
Alignment:
| Q |
18 |
atacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatactaagttgatctgccattgttgcgttgttc |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||| ||| |||||||||||||||||| |||||| |
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| T |
47788390 |
atacttacgatgtgagtcaccatttatagccttgcttcttaaatcattcaacaattgttttaccaagatattaaattgatctgccattgttgcattgttc |
47788291 |
T |
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| Q |
118 |
gagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattg |
217 |
Q |
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| T |
47788290 |
aagttccatgcaaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattg |
47788191 |
T |
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| Q |
218 |
cttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtcttgaggattaatgtctcctctacatattccaat |
317 |
Q |
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| T |
47788190 |
cttcttttttgtttggacatgcttgtgttagattgaatttggaaccaattaggcatttgcgacaatcttgaggattaatgtctcctctacatattccaat |
47788091 |
T |
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| Q |
318 |
gacgtttactttgtcattgttttggccatagt |
349 |
Q |
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| |||||||| ||||||||||||||||||||| |
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| T |
47788090 |
ggcgtttactgtgtcattgttttggccatagt |
47788059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 47811705 - 47811376
Alignment:
| Q |
18 |
atacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatactaagttgatctgccattgttgcgttgttc |
117 |
Q |
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|||||||| ||||||||||||||||||||||||| || |||||||||| |||| |||| ||| | || | | ||||||||||| ||||| |||||| |
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| T |
47811705 |
atacttacgatgtgagtcaccatttatagccttgttttttaaatcattcaacaattgttttatcacactattgaattgatctgccaaagttgcattgttc |
47811606 |
T |
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| Q |
118 |
gagttccac-atagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatc---ctcgtaccatcca |
213 |
Q |
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| T |
47811605 |
acgttccaccaaattata-gcaggccacatttcgctgaggcctaatatcgaacggtctgaataacgcagcatgcatttctgatcagcctcgtaccatcca |
47811507 |
T |
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| Q |
214 |
attgcttcttttttgtttggacatgcctgtgtgagattgaatttggaacctattaggcatttgcgacagtcttgaggattaatgtctcctctacatattc |
313 |
Q |
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|||||||||||||||||||||||||| | ||| |||| | |||| |||| | || ||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
47811506 |
attgcttcttttttgtttggacatgcttctgttagataggattttgaactaacgagacatttgcgacaatcttcaggattaatgtctcctctacatattc |
47811407 |
T |
|
| Q |
314 |
caatgacgtttactttgtcattgttttggcc |
344 |
Q |
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|||||| |||||||||||| | ||||||||| |
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| T |
47811406 |
caatgaggtttactttgtcctcgttttggcc |
47811376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 47778144 - 47778050
Alignment:
| Q |
142 |
ccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttcttttttgtttggaca |
236 |
Q |
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| T |
47778144 |
ccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggaca |
47778050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 6523810 - 6523718
Alignment:
| Q |
160 |
aatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttcttttttgtttggacatgcctgtgtgagattg |
252 |
Q |
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| T |
6523810 |
aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgtgagattg |
6523718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 6521836 - 6521743
Alignment:
| Q |
132 |
ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
225 |
Q |
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| T |
6521836 |
ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttctttt |
6521743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 47760265 - 47760314
Alignment:
| Q |
298 |
tctcctctacatattccaatgacgtttactttgtcattgttttggccata |
347 |
Q |
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| T |
47760265 |
tctcctctacagagtccaatggcgtttactttgtcagtgttttggccata |
47760314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 6506946 - 6506992
Alignment:
| Q |
179 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
225 |
Q |
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| T |
6506946 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
6506992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 971 - 1017
Alignment:
| Q |
179 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
225 |
Q |
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|||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
971 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
1017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 8624 - 8670
Alignment:
| Q |
179 |
aacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
225 |
Q |
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|||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
8624 |
aacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
8670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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