View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_30 (Length: 361)
Name: NF18757_high_30
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 2223513 - 2223164
Alignment:
| Q |
18 |
aattaaataaactttgtgagccaaatttggcatttgatgattatcatatgtttaggttcttgattgtgttggattaagt------------cccnnnnnn |
105 |
Q |
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| T |
2223513 |
aattaaataaactttgtgagccaaatttggcatttgatgatcatcatatatttaggttcttgattgtgttggattaagtgtcgtgaagacgcccaaaaaa |
2223414 |
T |
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| Q |
106 |
nnttcaaagtaatacagccattaccactcttaccattaagcaatgtaggacttggtgttttcataagtaaa-tctatacattacattctgaaactgcaag |
204 |
Q |
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| T |
2223413 |
aattcaaagtaatacagccattaccactcttaccattaagcaatgtaggacttggtgttttcataagtaaaatctatacattacattctgaaactgcaag |
2223314 |
T |
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| Q |
205 |
ttctagagttaagtatttcttgcaaatatcatttctgacagtgtgttgaagtaat-nnnnnnnncagaaagaaagaacatatataagcattgcaactcaa |
303 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2223313 |
ttctagagttaagtatttcttgacaatatcatttctgagagtgtgttgaagtaataaaaaaaaacagaaagaaagaacatatataagcattgcaactcaa |
2223214 |
T |
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| Q |
304 |
aacttcataagcatcatatatatccaaacatgttttgcactagatgatgt |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2223213 |
aacttcataagcatcatatatatccaaacatgttttgcactagttgatgt |
2223164 |
T |
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