View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_35 (Length: 350)
Name: NF18757_high_35
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 113 - 332
Target Start/End: Original strand, 45863301 - 45863513
Alignment:
| Q |
113 |
ttaaatctaaatgcaacatagattaggattatcagggtaactaccggcctgcacttcgaacaggaccacataattgttaaccattcctccatgatgacca |
212 |
Q |
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| T |
45863301 |
ttaactctgaatgcaacatagattaggattatcagggtaactacc----tgcactttgaacaggaccacataattgttaaccattcctccatgatgacca |
45863396 |
T |
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| Q |
213 |
aggaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttccagagctttaaggacctcagtcatta |
312 |
Q |
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| T |
45863397 |
agga---tgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttccagagctttaaggacctcagtcatta |
45863493 |
T |
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| Q |
313 |
tctcatgaggttgggcttga |
332 |
Q |
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| T |
45863494 |
tctcatgaggttgggcttga |
45863513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 329
Target Start/End: Complemental strand, 17407207 - 17407060
Alignment:
| Q |
179 |
cacataattgttaaccattcctccatgatgaccaaggaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattc |
278 |
Q |
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| T |
17407207 |
cacagaattgttatccattcctccatgatgaccagggatgat---aacagcccatctgcacttcatgttatagggtccaatttttttccaacagacactc |
17407111 |
T |
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| Q |
279 |
aattgttccagagctttaaggacctcagtcattatctcatgaggttgggct |
329 |
Q |
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| T |
17407110 |
aattcttgcagagctttaaggacttcggtcattatttcacgaggttgggct |
17407060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 329
Target Start/End: Complemental strand, 17411660 - 17411523
Alignment:
| Q |
189 |
ttaaccattcctccatgatgaccaaggaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttcca |
288 |
Q |
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| T |
17411660 |
ttaaccattcctccttgatgaccagggatga---caacagtccatatgcacttcatgttatagggtccaatttttttccaacagacattcaattcttgca |
17411564 |
T |
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| Q |
289 |
gagctttaaggacctcagtcattatctcatgaggttgggct |
329 |
Q |
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| T |
17411563 |
gagctttgaggacgtcagtcattatttcacgaggttgggct |
17411523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 4050596 - 4050719
Alignment:
| Q |
196 |
ttcctccatgatgaccaaggaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttccagagcttt |
295 |
Q |
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| T |
4050596 |
ttcctccatgatgaccaggga---tgccaacggcccatctgcacttcatgttatagggtccaatttttttccaacagacattcagttcttgcagagcttt |
4050692 |
T |
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| Q |
296 |
aaggacctcagtcattatctcatgagg |
322 |
Q |
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| T |
4050693 |
aaggacttcggtcattatttcacgagg |
4050719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 17407393 - 17407310
Alignment:
| Q |
56 |
agcatcagtgaatgaggatgaaaaagttactaataagtcggtaattaaacaattcatttaaatctaaatgcaacatagattagg |
139 |
Q |
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| T |
17407393 |
agcatcaatgaatgacaatgaaaaagttaatactataccggtaaatatacaattcgtttaaatctaaatgcaacatagattagg |
17407310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 4050474 - 4050515
Alignment:
| Q |
98 |
aattaaacaattcatttaaatctaaatgcaacatagattagg |
139 |
Q |
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| T |
4050474 |
aattaaacaattcgtttaaatcgaaatgcaacatagattagg |
4050515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 17411786 - 17411753
Alignment:
| Q |
97 |
taattaaacaattcatttaaatctaaatgcaaca |
130 |
Q |
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| T |
17411786 |
taattaaacaattcatttaaatctaaatgaaaca |
17411753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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