View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_40 (Length: 314)
Name: NF18757_high_40
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_40 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 35204950 - 35205257
Alignment:
| Q |
13 |
aatattcacataatactcaaatggtcttgcacaaagtgcacttaaattacttatgaagggtgtgagcttttcacttgccttttnnnnnnncaggagtaga |
112 |
Q |
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| T |
35204950 |
aatattcacataatactcaaatggtcttgcaaaaagtgtacttaaattacttatgaagggtgtgagcttttcacttgccttttaaaaaaacaggagtaga |
35205049 |
T |
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| Q |
113 |
attgtaaaacaacagttactaagcaatgataagttgccactaatgtttcc--nnnnnnnntctaagcagacctcaagagcgcagttgattaatgtcttaa |
210 |
Q |
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| T |
35205050 |
attgcaaaacaacagttactaagcaatgataagttgccactaatgtttccaaaaaaaaaatctaagtagacctcaagagcgccgttaattaatgtcttaa |
35205149 |
T |
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| Q |
211 |
ctagaataaatactacaatcaaagagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaataat----attggatttacac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |
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| T |
35205150 |
ctagaataaatactacaatcaaagagaatttagctccaataagcctctttcaacataccatcttgacatgtattatcaataatattaattggatttactc |
35205249 |
T |
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| Q |
307 |
agagtttc |
314 |
Q |
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|||||||| |
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| T |
35205250 |
agagtttc |
35205257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 22472301 - 22472359
Alignment:
| Q |
232 |
aagagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaat |
290 |
Q |
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| T |
22472301 |
aagagaatttagctacaataagcctctttcatccaaccatcttgacatgtatcaccaat |
22472359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 5649 - 5545
Alignment:
| Q |
198 |
attaatgtcttaactagaataaatactacaatcaaagagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaataatattg |
297 |
Q |
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||||||||||||||||||| | |||||| ||| |||| |||||||||||||||||||||| | ||||| ||||||||| ||||||||| | || |
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| T |
5649 |
attaatgtcttaactagaacagatactatggctgaagtgaatgtagctccaataagcctctttcatctcaccatgatgacatgtaccatcaataacactg |
5550 |
T |
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| Q |
298 |
gattt |
302 |
Q |
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||||| |
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| T |
5549 |
gattt |
5545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 2907328 - 2907267
Alignment:
| Q |
103 |
caggagtagaattgtaaaacaaca--gttactaagcaatgataagttgccactaatgtttcc |
162 |
Q |
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| T |
2907328 |
caggagtagaattataaaacaacacagttattaagctataataagttgctactaatgtttcc |
2907267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 31442049 - 31442115
Alignment:
| Q |
233 |
agagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaataatattgga |
299 |
Q |
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| T |
31442049 |
agagaatgtagctccaataagcctctttcattctaccatcctggcatgcaccatcaataatgttgga |
31442115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 42300455 - 42300394
Alignment:
| Q |
232 |
aagagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaataat |
293 |
Q |
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| T |
42300455 |
aagagaatgtaactccaataagcctctttcatctcaccatcaagacatgtaccatcaataat |
42300394 |
T |
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