View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_44 (Length: 297)
Name: NF18757_high_44
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 28725223 - 28724960
Alignment:
| Q |
16 |
atgaaaatgaaagataatctatattgagaaatgttacttcatctcaatatttcaagaaccataaagaaaacgttcttcattttctttagcttcaatacca |
115 |
Q |
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| T |
28725223 |
atgaaaatgaaagataatctatattgagaaatgttacttcatctcaatatttcaagaaccataaagaaaacgttcttcattttggttagcttcaatacca |
28725124 |
T |
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| Q |
116 |
aaacattgtatccttgtgtatgtgggataagtcatggaacacccaatgagcttctggaaatcatgcaaagcattcatgtcgtcgttaaagccagcggtgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28725123 |
aaacattgtatccttgtgtatgtgggataagtcatggaacacccaacgagcttctggaaatcatgcaaagcattcatgtcgtcgttaaagccagcggtgt |
28725024 |
T |
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| Q |
216 |
tttgaatttgctcaagttggagtcgagcaatttgtcgctcatgctttattttcaggggtattct |
279 |
Q |
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| T |
28725023 |
tttgaatttgctcaagttggagtcgagcaatttgtctctcatactttattttcaggggtattct |
28724960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 28727717 - 28727472
Alignment:
| Q |
9 |
gaagaatatgaaaatgaaagataatctatattgagaaatgttacttcatctcaatatttcaagaaccataaagaaaacgttcttcattttctttagcttc |
108 |
Q |
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| T |
28727717 |
gaagaaaatgaaaattgaagataatctatactgagaaatgtcacttcatctcaatatctcaagaaccataaagaaaacattcttaa-----cttagcctc |
28727623 |
T |
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| Q |
109 |
aataccaaaacattgtatccttg-tgtatgtgggataagtcatggaacacccaatgagcttctggaaatcatgcaaagcattcatgtcgtcgttaaagcc |
207 |
Q |
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| T |
28727622 |
gctaccaaaacatcgtgtccttgttgtatgtgggataagttacagaataaccaaggaggttgtaaaattcatacatagcatccatgttatcgttaaatcc |
28727523 |
T |
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| Q |
208 |
agcggtgttttgaatttgctcaagttggagtcgagcaatttgtcgctcatg |
258 |
Q |
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| T |
28727522 |
agcggtgttttttatttgctcgagttggagtcaagccatttgtctctcatg |
28727472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 28733928 - 28733846
Alignment:
| Q |
9 |
gaagaatatgaaaatgaaagataatctatattgagaaatgttacttcatctcaatatttcaagaaccataaagaaaacgttct |
91 |
Q |
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| T |
28733928 |
gaagaaaatcaaaatggaagataatctatactgagaaatgtcacttcatctcaatatctcaagaaccataaagaaaacattct |
28733846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 32280935 - 32280896
Alignment:
| Q |
16 |
atgaaaatgaaagataatctatattgagaaatgttacttc |
55 |
Q |
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| T |
32280935 |
atgaaaatgaaagataatctatattgtgaaatgttacttc |
32280896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 36086955 - 36086991
Alignment:
| Q |
212 |
gtgttttgaatttgctcaagttggagtcgagcaattt |
248 |
Q |
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| T |
36086955 |
gtgttttgaatttgctcaagtttgagtcgagcgattt |
36086991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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