View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_56 (Length: 251)
Name: NF18757_high_56
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 34314020 - 34314250
Alignment:
| Q |
18 |
cttcttactcgtcaatccagcagttgcaagttgcaacttcctatgaaccatgccacattacaacttatatatgcaacaagaccactaattctgttccacc |
117 |
Q |
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| T |
34314020 |
cttcttactcgtcaatccagcagttgcaagttgcaacttcctatgaaccatgccacattacaacctatatatgcaacaagaccaccaattctgttccacc |
34314119 |
T |
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| Q |
118 |
aaattgaacaaacaaacatcaccaccttaatatactagaaatgaggctactacaactcaacatgttactagtaccatttttcttgcttgttcttgctggt |
217 |
Q |
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| T |
34314120 |
aaattgaacaaacaaacatcaccaccttaatatactagaaatgaggctacaacaactcaacatgttactagtaccatttttcttgcttgttcttactggt |
34314219 |
T |
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| Q |
218 |
ggttttcctaccaaagcaaaaggtttgctac |
248 |
Q |
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| T |
34314220 |
ggttttcctaccaaagcaaaaggtttgctac |
34314250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 33425884 - 33426047
Alignment:
| Q |
45 |
aagttgcaacttcctatgaaccatgccacattacaacttatatatgcaacaagaccactaattctgtt-ccaccaaattgaacaaacaaacatcaccacc |
143 |
Q |
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| T |
33425884 |
aagttgcaactgcctatcaaccattccacattacaacctatataagcaacaagaccagtaattcaatttccaccaaattgaataaacaatcatcagtacc |
33425983 |
T |
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| Q |
144 |
ttaatatactagaaatgaggctactacaactcaacatgttactagtaccatttttcttgcttgt |
207 |
Q |
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| T |
33425984 |
ttaatatactagaaataaggctacaacaactcaacatgttaccagtaccatttttcttgcttgt |
33426047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 115 - 241
Target Start/End: Complemental strand, 34317621 - 34317495
Alignment:
| Q |
115 |
accaaattgaacaaacaaacatcaccaccttaatatactagaaatgaggctactacaactcaacatgttactagtaccatttttcttgcttgttcttgct |
214 |
Q |
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| T |
34317621 |
accaaattgaagaaataaacatcagtaccttaatatactagaaatgaggctacaacaactcaacatgttactagtactttttttcttgattgttcttgct |
34317522 |
T |
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| Q |
215 |
ggtggttttcctaccaaagcaaaaggt |
241 |
Q |
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| T |
34317521 |
ggtagttttccaaccaaagcaaaaggt |
34317495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 34305169 - 34305015
Alignment:
| Q |
46 |
agttgcaacttcctatgaaccatgccacattacaacttatatatgcaacaagaccactaattctgttccaccaaattgaacaaacaaacatcaccacctt |
145 |
Q |
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| T |
34305169 |
agttgcaactgcctatgaacaatgccacattacaacctatatatgcaacaagacca-----------------aattgaagaaacaaacatcagtacctt |
34305087 |
T |
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| Q |
146 |
aatatactagaaatgaggctactacaactcaacatgttactagtaccatttttcttgcttgttcttgctggt |
217 |
Q |
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| T |
34305086 |
aatatactagaaatgaggctacaacaactcaacatgttactagtaccatttttcttgcttgttcttactggt |
34305015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 34317673 - 34317618
Alignment:
| Q |
46 |
agttgcaacttcctatgaaccatgccacattacaacttatatatgcaacaagacca |
101 |
Q |
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| T |
34317673 |
agttgcaactgcctatgaacaatgccacattacaatctatatatgcaacaagacca |
34317618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 34311701 - 34311783
Alignment:
| Q |
158 |
atgaggctactacaactcaacatgttactagtaccatttttcttgcttgttcttgctggtggttttcctaccaaagcaaaagg |
240 |
Q |
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| T |
34311701 |
atgaggctagaacaactcaacatgttactcgtaccatttctcttgcttattcttgttggttattttccttctaatgcaaaagg |
34311783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 25651833 - 25651639
Alignment:
| Q |
46 |
agttgcaacttcctatgaaccatgccacattacaacttatatatg-----caacaagaccactaattctgttc-caccaaattgaacaaacaaacatcac |
139 |
Q |
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| T |
25651833 |
agttgaaactgcctatgaaccatgctacattacaacctatatatgtaatgcaacaagaccagtaattctatttgcaccaaattgaataaacaaacatcag |
25651734 |
T |
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| Q |
140 |
caccttaatatactagaaatgaggctactacaactcaacatgtta----ctagtaccatttttcttgcttgttcttgctggtggttttcctacca |
230 |
Q |
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| T |
25651733 |
taccttaatatactagaaatgtggctacaacaactcaacatgttactagctagtaccatttttcttgtgtgttcttgctggtagttttcctacca |
25651639 |
T |
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