View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_64 (Length: 238)
Name: NF18757_high_64
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_64 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 6625370 - 6625150
Alignment:
| Q |
18 |
agaaatgccacacaacctaattataagtcataatattttcagatagaagacaagttttatatttatttggaatttatccatcctggttcaataaataaat |
117 |
Q |
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| T |
6625370 |
agaaatgccacacaacctaattataagtcataatattttcagatagaagacaagttttatatttatttggaatttatccatcctggttcaataaataaat |
6625271 |
T |
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| Q |
118 |
acgttcgggaccactgtggtgcgataacagaatccgttgttcggaatttcacacgacatattctttcggggttggcttacttgcacagcaaaaagacaat |
217 |
Q |
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| T |
6625270 |
acgttcgggaccactgtggtgcgataacagaatccgttgttcggaatttcacacgacatattctttcggggttggcttacttgcacagcaaaaagacaat |
6625171 |
T |
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| Q |
218 |
tcacaggtatgggtcacatgc |
238 |
Q |
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| T |
6625170 |
tcacaggtatgggtcacatgc |
6625150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 18718762 - 18718824
Alignment:
| Q |
161 |
gaatttcacacgacatattctttcggggttggcttacttgcacagcaaaaagacaattcacag |
223 |
Q |
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| T |
18718762 |
gaatttcacaagacaatttcttttggggttggcttacttgcacagcaaaaagacaattcacag |
18718824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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