View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_66 (Length: 235)
Name: NF18757_high_66
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 50648026 - 50648248
Alignment:
| Q |
1 |
atatatctttttgctttcttcaattgaaaacagcaaattgatgaaaaaccaaaagag--aggaaaaccttatcgttgacaaattgatgaactgttaagct |
98 |
Q |
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| T |
50648026 |
atatatctttttgctttcttcaattgaaaacagcaaattgatgaaaaaccaaaagagagaggaaaaccttatcgttgacaaattgatgaactgttaagct |
50648125 |
T |
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| Q |
99 |
aaaaccaagacatgaactgttaaccttgtcgttttcaatttactggagctgctgcggatggaacgcgacagagggttgaaatgggtaccgagaaggaggt |
198 |
Q |
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| T |
50648126 |
aaaaccaagacatgaactgttaaccttgtcgttttcaatttactggagctgctgcggatcgaacgcgacagagggttgaaatgggtaccgagaaggaggt |
50648225 |
T |
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| Q |
199 |
tgttggttggtgactggagatgg |
221 |
Q |
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| T |
50648226 |
tgttggttggtgactggagatgg |
50648248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 31532087 - 31532256
Alignment:
| Q |
58 |
aggaaaaccttatcgttgacaaattgatgaactgttaagctaaaaccaagacatgaactgttaaccttgtcgttttcaatttactggagctgctgcggat |
157 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||| ||||| || ||||||||||||||||||||||| ||||||| |
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| T |
31532087 |
aggaaaacattatcgttgacaaattgttgaactgttaagctaaaaccgaggtatgaactattaacgttatcgttttcaatttactggagctgttgcggat |
31532186 |
T |
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| Q |
158 |
ggaacgcgacagagggttgaaatgggtaccg------agaaggaggttgttggttggtgactggagatgg |
221 |
Q |
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|| | |||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
31532187 |
cgatcacgacggagggttgaaatgggtaccgagaataagaaggaggttgttggttggtgcctggatatgg |
31532256 |
T |
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