View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_7 (Length: 563)
Name: NF18757_high_7
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 8946663 - 8947170
Alignment:
| Q |
18 |
aatacttattctcaaacaccatttaggaaaccacaatatgatattccagcatacactaacttattgatttcatatgccttagacttcattcaggtattct |
117 |
Q |
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| T |
8946663 |
aatacttattctcaaacaccatttaggaaaccacaatatgatattccagcatacactaacttattgatttcatatgccttagacttcattcaggtattct |
8946762 |
T |
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| Q |
118 |
gttatacaaacatggattcatagagttttgaataagaatgttgtttcttataacttcgttttctttgtccagtaatattagttattacctaaaataatgc |
217 |
Q |
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| T |
8946763 |
gttatacaaacatggattcatagagttttgaataagaatgttgtttcttataacttcattttctttgtccagtaatattagttattacctaaaataatgc |
8946862 |
T |
|
| Q |
218 |
aggaactttatggtttaggagctagaagaattggagtaattgggatgccatatatagggtgtgttccctcacagagaacaattggaggaggaatgtatag |
317 |
Q |
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| T |
8946863 |
aggaactttatggtttaggagctagaagaattggagtaattggcatgccatatatagggtgtgttccctcacagagaacaattggaggaggaatgtatag |
8946962 |
T |
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| Q |
318 |
atactgttcaggtttagaaaacgaagctgcaatagtcttcaactccaaactagtatctcaaatggatgcctttgaaaataaatttctagaggctaagctt |
417 |
Q |
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| T |
8946963 |
acactgttcaggtttagaaaacgaagctgcaatagtcttcaactccaaactagtatctcaaatggatgcctttgaaaataaatttccagaggctaagctt |
8947062 |
T |
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| Q |
418 |
gtctaccttgatatttacaacccattcatgcatatgattcaaaaccctgataaatatggtaacaatcagacacaagcattgtcattttcaccttttatac |
517 |
Q |
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| T |
8947063 |
gtctaccttgatatttacaacccattcatgcatatgattcaaaaccctgataaatatggtaacaatcagagacaagcattgtcattttcaccttttatac |
8947162 |
T |
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| Q |
518 |
gtagctta |
525 |
Q |
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| T |
8947163 |
gtagctta |
8947170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 217 - 436
Target Start/End: Original strand, 8939329 - 8939548
Alignment:
| Q |
217 |
caggaactttatggtttaggagctagaagaattggagtaattgggatgccatatatagggtgtgttccctcacagagaacaattggaggaggaatgtata |
316 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| || | | |
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| T |
8939329 |
caggaactatatggtttaggagctagaaggattggagtaattggtatgccaaatatagggtgtgtgccctcacagagaacaattggaggaggcattgaaa |
8939428 |
T |
|
| Q |
317 |
gatactgttcaggtttagaaaacgaagctgcaatagtcttcaactccaaactagtatctcaaatggatgcctttgaaaataaatttctagaggctaagct |
416 |
Q |
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| T |
8939429 |
gaggatgttcagattttgaaaaccaagcagcaagactcttcaactccaaattagtatctaaaatggatgcctttgaaaataaatttccagaagctaagct |
8939528 |
T |
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| Q |
417 |
tgtctaccttgatatttaca |
436 |
Q |
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| T |
8939529 |
tgtctaccttgatatttaca |
8939548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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