View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_71 (Length: 208)
Name: NF18757_high_71
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 13916914 - 13917000
Alignment:
| Q |
104 |
aatgacaatatagaaaattagggttatggataatggtatttagtaggaagaaaaacttaaaagagagttcttgtataattgattggtc |
191 |
Q |
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| T |
13916914 |
aatgacaatatagaaaattagggttatggataatggtatttagtaggaagaaaaactt-aaagagagttcttgtataattgattggtc |
13917000 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 13916816 - 13916890
Alignment:
| Q |
16 |
aaaataggacaagtaaagaatagagcttttagcatcattgataaatacatatatcgcacggtttaaataaggtcc |
90 |
Q |
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| T |
13916816 |
aaaataggaaaagtaaagaatagagcttttagcatcattgataaatacatatatcgcacggtttaaataaggtcc |
13916890 |
T |
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