View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_high_72 (Length: 207)

Name: NF18757_high_72
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_high_72
NF18757_high_72
[»] chr3 (4 HSPs)
chr3 (17-189)||(53415959-53416129)
chr3 (111-189)||(53412233-53412311)
chr3 (111-187)||(53366501-53366577)
chr3 (17-109)||(53366234-53366319)
[»] chr1 (1 HSPs)
chr1 (129-189)||(14923374-14923434)
[»] scaffold0172 (1 HSPs)
scaffold0172 (145-187)||(2478-2520)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 53416129 - 53415959
Alignment:
Q  17 atgagagaaaggacttcagatgtgtacatttgaagaaagnnnnnnnnncacaaattccgtgccatccataagtacatttctgaaaatatgtgttatcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53416129 atgagagaaaggacttcagatgtgtacatttgaagaaa--aaaaaaaacacaaattccgtgccatccataagtacatttctgaaaatatgtgttatcaat 53416032  T
Q  117 tgtagtaataacaagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactgat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53416031 tgtagtaataacaagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactgat 53415959  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 53412311 - 53412233
Alignment:
Q  111 atcaattgtagtaataacaagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactgat 189  Q
    |||||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53412311 atcaattgtaatcataacaagtgaagaagtccagaccttttcaataggaacctcatgccgcttgcaccaggcaactgat 53412233  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 53366501 - 53366577
Alignment:
Q  111 atcaattgtagtaataacaagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactg 187  Q
    |||||||||| | |||||||||||| ||||  |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  53366501 atcaattgtaatcataacaagtgaagaagtctagaccttttcgataggaacctcatgccgtttgcaccaggcaactg 53366577  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 53366234 - 53366319
Alignment:
Q  17 atgagagaaaggacttcagatgtgtacatttgaagaaagnnnnnnnnncacaaattccgtgccatccataagtacatttctgaaaatatgtgt 109  Q
    ||||||||||||||||||| |||||||||||||| |||          ||||||||  ||||||||||| |||| ||||||||||||||||||    
T  53366234 atgagagaaaggacttcaggtgtgtacatttgaaaaaa-------aaacacaaattttgtgccatccatgagtatatttctgaaaatatgtgt 53366319  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 14923434 - 14923374
Alignment:
Q  129 aagtgaataagttcagaccttttcaataggaacctcatgccgcttgcaacaggcaactgat 189  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  14923434 aagtgaagaagtccagaccttttcaataggaacctcgtgccgcttgcaccaggcaactgat 14923374  T

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Target: scaffold0172 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 2478 - 2520
Alignment:
Q  145 accttttcaataggaacctcatgccgcttgcaacaggcaactg 187  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||    
T  2478 accttttcaatgggaacctcgtgccgcttgcaccaggcaactg 2520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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