View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_high_9 (Length: 553)
Name: NF18757_high_9
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 16 - 547
Target Start/End: Original strand, 1609967 - 1610499
Alignment:
| Q |
16 |
gattggatggtaatttggagacttgcagtgcagccaaaggtgagaaattttgtctggaaagtgaaagtggccgaaaattgtctactaacacgtgtaaaac |
115 |
Q |
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| T |
1609967 |
gattggatggtaatttggagacttgcagtgcagccaaaggtgagaaattttgtctggaaagtgaaagtggccgaaaattgtctactaacacgtgtaaaac |
1610066 |
T |
|
| Q |
116 |
taactgataaagaaatgcatgatgggactaaacaagtcataaatagaatagtgtataaccataatgcaggtgacacctatccttttcaaaaaa-gacttn |
214 |
Q |
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| T |
1610067 |
taactaataaagaaatgcatgatgggactaaacaagtcataaatagaatagtgtataaccataatgcaggtgacacctatccttttcaaaaaaagactta |
1610166 |
T |
|
| Q |
215 |
nnnnnncaagtcataccttgttatctccatttcttaggtattccaaacaatgttgaacaacatgatttccattattgtcttttatgagaatcaagaatcc |
314 |
Q |
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| T |
1610167 |
aaaaaacaagtcataccttgttatctccatttcttaggtattccaaacaatgttgaacaacatgatttccattattgtcttttatgagaatcaagaatcc |
1610266 |
T |
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| Q |
315 |
tggttcaagagctgatacaactaatgaaacttgttgcttagttttgagagtctcgatcagcttctgcacaacacgagtgttgtgggaaggagagaacaat |
414 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1610267 |
tggttcaagagctgatacgactaatgaaacttgttgcttagttttgagagtctcgatcagcttctgcacaacacgagtgctgtgggaaggagagaacaat |
1610366 |
T |
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| Q |
415 |
gaggtcaagttcagcattagataataagtacattatttcatattaattataaaatagttgcatgactacccgtgagtatttaacgagattctgacaagct |
514 |
Q |
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| T |
1610367 |
gaggtcaagttcaacattagataataagtacattatttcatattagttataaaatagttgcatgactacccgtgagtatttaacgagattctgacaagct |
1610466 |
T |
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| Q |
515 |
gccccggctcctggataaccatcagtattatct |
547 |
Q |
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| T |
1610467 |
gccccggctcctggataaccatcagtatgatct |
1610499 |
T |
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