View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_1 (Length: 1021)
Name: NF18757_low_1
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 16 - 766
Target Start/End: Complemental strand, 38124938 - 38124185
Alignment:
| Q |
16 |
atgatagcgtaggaatcatctgaaaatcgatgtatggtacactaatgaacttgtgcaagagagtaaaaaagaa-ctacctccgtacaatacacaaaaaat |
114 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||||||||| |
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| T |
38124938 |
atgatagtgtaggaatcatctgaaaatcgatgtatggtacactaatgaacttgtgcaagagagtaaaaaaaaaactacctctgtacaatatacaaaaaat |
38124839 |
T |
|
| Q |
115 |
gttaaaatcccttcgtaaacctctgcatgagttttagtgcaccagattgaaggnnnnnnnn-ctaccttatacacaatattgaaccaagcttaattaata |
213 |
Q |
| |
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||||||||||||| |||||| | |||||||||||||||||| || || ||||| |||||||||| ||||||||||||||||||||||||| | |
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| T |
38124838 |
gttaaaatccctttgtaaacttgtgcatgagttttagtgcatcatatcgaaggaaaaaaaaactaccttatatacaatattgaaccaagcttaattaaga |
38124739 |
T |
|
| Q |
214 |
ttcaaatatatctaacatacgagttgtactctccataataaaaatcaacaacgtacgagttagaaatgtactctttcttta-atnnnnnnnnntcagcaa |
312 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||| |
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| T |
38124738 |
tttaaatatatctaacatacgagttgtactctccataataaaaatcaacaacgtatgagttagaaatgtactctctctttttaaaaaaaaaaatcagcaa |
38124639 |
T |
|
| Q |
313 |
aatttgacacatctcacagttgtaataaaatgcaagcaaaaataaactcttttaatcatctttagtgatacagtatnnnnnnntgtccttaaaagataat |
412 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38124638 |
aatttgacacatctcacggttgtaataaaatgcaagcaaaaataaactcttttaatcatctttagtgatacagtataaaaaaatgtccttaaaagataat |
38124539 |
T |
|
| Q |
413 |
gatttttgttatagaatttaataaaatgagggataatttagataatgatgtttaagttttaattttaaatgagattaataagagtaaatgtgaataatta |
512 |
Q |
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| T |
38124538 |
gatttttgttatagaatttaataaaatgagggataatttagataatgatgtttaagttttaattttaaatgagattaataagagtaaatgtgaataatta |
38124439 |
T |
|
| Q |
513 |
tcttaacaagtttggaagtagttaattttgttaccggtgaagtctaaatttctttatgaaaatttaaggaactagatcatctcatgtgtgatcttcaaat |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38124438 |
tcttaacaagtttggaagtagttaattttgttaccggtgaagtctaaatttctttatgaaaatttaaggaactagatcatctcatgtgtgatcttcaaat |
38124339 |
T |
|
| Q |
613 |
tataaagtaatgtataatttctaaccattcnnnnnnnnnnnnnnnnnntatatcatttcgatgttttatatgtttctctctcatttttaatagtgagaca |
712 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38124338 |
tataaagtaatgtataatttctaaccattcaaaataaaaagaaaaaaaaatatcatttcgatgttttatatgtttctctctcatttttaatagtgagaca |
38124239 |
T |
|
| Q |
713 |
ctcataaaaattacacctaagatctatttttggaaaagggaaatgttatgacac |
766 |
Q |
| |
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|
| T |
38124238 |
ctcataaaaattacacctaagatctatttttggaaaaggaaaatgctatgacac |
38124185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 776 - 1004
Target Start/End: Complemental strand, 38124160 - 38123934
Alignment:
| Q |
776 |
ctctaacatccactattttattggatgaaattcatgtgagtatcatatcttagaaatggaccttccataaaatggtgaaactctgattaatttcactcaa |
875 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
38124160 |
ctctaacatccactattttattagatgaaatttatgtgagtatcatatcttaaaaatggactttccataaaatggtgaaactctgattaatttcactcaa |
38124061 |
T |
|
| Q |
876 |
tggtagagttgagttgaaaagaggatttgaaaaagagtgatgtaagcatttatctttctaaaatttaggattattttgatgggcaattgtaataataaat |
975 |
Q |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38124060 |
tagtagagttgagttgaaaaga-gatttgaaaaagagtgatgtaagcatttatctttctaaaatttaggattattttgat-ggcaattgtaataataaat |
38123963 |
T |
|
| Q |
976 |
gaccgtgccaccatgtaagggcgatatct |
1004 |
Q |
| |
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| T |
38123962 |
gaccgtgccaccatgtaagggcgatatct |
38123934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 853
Target Start/End: Original strand, 13639434 - 13639511
Alignment:
| Q |
776 |
ctctaacatccactattttattggatgaaattcatgtgagtatcatatcttagaaatggaccttccataaaatggtga |
853 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||| |||||| | || |||||||| || |||||| |||||| |
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| T |
13639434 |
ctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtga |
13639511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 791 - 853
Target Start/End: Original strand, 25695926 - 25695988
Alignment:
| Q |
791 |
ttttattggatgaaattcatgtgagtatcatatcttagaaatggaccttccataaaatggtga |
853 |
Q |
| |
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|||||||| |||||||||||| || || || || |||||||||||||| ||||||||||||| |
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|
| T |
25695926 |
ttttattgtatgaaattcatgcgaataccacatattagaaatggacctcacataaaatggtga |
25695988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 791 - 833
Target Start/End: Complemental strand, 21776648 - 21776606
Alignment:
| Q |
791 |
ttttattggatgaaattcatgtgagtatcatatcttagaaatg |
833 |
Q |
| |
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|||||||||||||||| ||||||||||||| || ||||||||| |
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| T |
21776648 |
ttttattggatgaaatacatgtgagtatcacatattagaaatg |
21776606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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