View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_12 (Length: 481)
Name: NF18757_low_12
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 336 - 463
Target Start/End: Complemental strand, 39299332 - 39299205
Alignment:
| Q |
336 |
aatgtctttggaagagatagggaagtatagaaaccaagcacaacaaaatgaaatggacgcaatctcagcagcacaagagaggtatgaaaaagcaaagcaa |
435 |
Q |
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| T |
39299332 |
aatgtctttggaagagatagggaagtatagaaaccaagcacaacaaaatgaaatggacgcaatctcagcagcacaagagaggtatgaaaaagcaaagcaa |
39299233 |
T |
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| Q |
436 |
gcaacaaacgaaacactaaacaacacag |
463 |
Q |
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| T |
39299232 |
gcaacaaacgaaacactaaacaacacag |
39299205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 39299471 - 39299363
Alignment:
| Q |
197 |
ttggtggtgaaaatgaaggtgtaatcttgggaaagagtgtagctgagcaaagaggaagagcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgg |
296 |
Q |
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| T |
39299471 |
ttggtggtgaaaatgaaggtgtaatcttgggaaagagtgttgctgagcaaagaggaagagcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgc |
39299372 |
T |
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| Q |
297 |
tgctgaaca |
305 |
Q |
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| T |
39299371 |
tgctgaaca |
39299363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 39299667 - 39299562
Alignment:
| Q |
1 |
atgggaacaggacaagttgtggccgagaaaggaagaaaaacagaggatttaggaacaagaggtgaaggaaaagtacctggtgctggaaatgtaggttcaa |
100 |
Q |
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| T |
39299667 |
atgggaacaggacaagttgtggcagagaaaggaagaaaaacagaggatttaggaacaagaggtgaaggaaaagtacctggtgctggaaatgtaggttcga |
39299568 |
T |
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| Q |
101 |
tgtggg |
106 |
Q |
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|||||| |
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| T |
39299567 |
tgtggg |
39299562 |
T |
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