View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_13 (Length: 475)
Name: NF18757_low_13
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 5254550 - 5254199
Alignment:
| Q |
11 |
cataggcagcaaataaagtttattcactacagatagaagatcagttataggcattgcaactgctgcaaaacaagtaaacgacccctcccattcccatnnn |
110 |
Q |
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| T |
5254550 |
catatgcagcaactaaagtttattcactacagatagcagatcagttataggcattgcaactgctgcaaaacaagtaaacgacccctcccattcccataaa |
5254451 |
T |
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| Q |
111 |
nnnnngtgtgcgacaaaga--acaaaatattcttctggttcagaccacaaagtgcaattcattgtcaacttacaaaggatgcactgtgtcatactgtgtt |
208 |
Q |
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| T |
5254450 |
aaaaagtgtgcgacaaagagaacaaaatattcttctggttcagaccacaaagtgcaattcattgtcaacttacaatggatgcactgtgtcatattgtgtt |
5254351 |
T |
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| Q |
209 |
atggtcgttaatatattgaagatagttactcttgtggtatcaaatacataaataacataaacaaattcttttgtgattttttaaaattaatagataaaat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5254350 |
atggtcgttaatatattgaagatagttactcttgtggtatc----acataaataacataaacaaattc--ttgtgattttttaaaattaatagataaaat |
5254257 |
T |
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| Q |
309 |
ttcaggacataattatacaaatacatgaggaaagcttaagctagaacatttgatattt |
366 |
Q |
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| T |
5254256 |
ttcaggacataattatacaaatacatgaggaaagcttaagctagaacatttgatattt |
5254199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 5179868 - 5179772
Alignment:
| Q |
11 |
cataggcagcaaataaagtttattcactacagatagaagatcagttataggcattgcaactgctgcaaaacaagtaaacgacccctcccattcccat |
107 |
Q |
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| T |
5179868 |
catatgcagtaaataaaacttattcaatagagacagcagatcagttataaacattgcaactgctgcaaaacaagtaaatgacacctcccattcccat |
5179772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 5281627 - 5281531
Alignment:
| Q |
11 |
cataggcagcaaataaagtttattcactacagatagaagatcagttataggcattgcaactgctgcaaaacaagtaaacgacccctcccattcccat |
107 |
Q |
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|||| |||| ||||||| ||||||| || ||| || |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
5281627 |
catatgcagtaaataaaacttattcaatagagacagcagatcagttataaacattgcaactgctgcaaaacaagtaaatgacacctcccattcccat |
5281531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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