View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_14 (Length: 470)
Name: NF18757_low_14
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 205 - 457
Target Start/End: Complemental strand, 33372908 - 33372657
Alignment:
| Q |
205 |
ttcaatgttacacattctattgttcnnnnnnntgttacacattttaagacaaattataaaaaggataataaatgcatttaaaaatttataaacagtctta |
304 |
Q |
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| T |
33372908 |
ttcaatgttacacattctattgttcaaaaaaatgttac-cattttaagacaaattagaaaaaggataataaatgcatttaaaaatttataaagagtctta |
33372810 |
T |
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| Q |
305 |
tattcaaggataaaatatttattgtaaaatgtcttataatcagtgacgaagaatgtaactattaacccaaattttgatactatcttgtgattcatcgacg |
404 |
Q |
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| T |
33372809 |
tattcaaggataaaatatttattgtaaaatgtcttataattagtgacgaagaatgcaactattaacccaaattttgatactatcttgtgattcatcgacg |
33372710 |
T |
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| Q |
405 |
tacattctaagaaagtatttataaattaacattatcccatgataccacaggtt |
457 |
Q |
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| T |
33372709 |
tacattcgaagaaagtatttataaattaacattatcccatgataccacaggtt |
33372657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 25250831 - 25250993
Alignment:
| Q |
32 |
gagtctaaggttacagaagcgttcgccaagataggtaaacgctttgcaagcaaatagagcagagagcttaccgtctgtttctattagagtcgcgagcttg |
131 |
Q |
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| T |
25250831 |
gagtctaaggttacagaagcgttcgccaagataggtaaacgctttgcaagcaaatagagcagagagcttaccgtctgtttctattagagtctcgagcttg |
25250930 |
T |
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| Q |
132 |
ttgtagtcggtccgtgaagggataacttgctgcttacttgctatatccccgcgttcttgcacg |
194 |
Q |
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| T |
25250931 |
ttgtagtcggtccgtgaagggataacttgccgcttacttgatatgcccctgtgttcttgcacg |
25250993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 19093709 - 19093787
Alignment:
| Q |
86 |
tagagcagagagcttaccgtctgtttctattagagtcgcgagcttgttgtagtcggtccgtgaagggataacttgctgc |
164 |
Q |
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| T |
19093709 |
tagagcagagagcttaccgtcggtttctattagagtcgcgagcttgttgtagtcggaccatgaagggataacttgctgc |
19093787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 10456786 - 10456748
Alignment:
| Q |
270 |
taataaatgcatttaaaaatttataaacagtcttatatt |
308 |
Q |
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| T |
10456786 |
taataaatgcatctaaaaatttataaatagtcttatatt |
10456748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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