View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18757_low_18 (Length: 452)
Name: NF18757_low_18
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Complemental strand, 42638519 - 42638083
Alignment:
| Q |
9 |
gaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatc |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42638519 |
gaagaatatggtgcgcaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatc |
42638420 |
T |
|
| Q |
109 |
accacactttttcgtatcattaaaagttatgatatggcagagtacttgaaactggaattcaagaaggtaaatgaatacctggttgctaaatttgtattag |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
42638419 |
accacactttttcgtatcataaaaagttatgatatggcagagtacttgaaactggaattcatgaaggtaaatgaatatctggttgccaaatttgcattag |
42638320 |
T |
|
| Q |
209 |
ttttctgacgaaagtatgggattgacacaagactttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatctt |
308 |
Q |
| |
|
| || |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42638319 |
tgttttgacgaaagtatgggact--cacaagactttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatctt |
42638222 |
T |
|
| Q |
309 |
cagatgtgtggtctgttggctaagtttgctcttgttcgcgaaactgctaaagctgcatgagtaggtcctaagtgcaactgatac-------tactttttc |
401 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
42638221 |
cagatgtgcggtctgttggctaagtttgctcttgttcgcgacactgctaacgctgcatgagtaggtcctaagtgcaactgatacacatcattagtttttc |
42638122 |
T |
|
| Q |
402 |
tggttttatggtagtgagaatgttgtactgatgaaacat |
440 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
42638121 |
cggctttatggtagtgagaatgctgtactgatgaaacat |
42638083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 42566433 - 42566552
Alignment:
| Q |
9 |
gaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42566433 |
gaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatc |
42566532 |
T |
|
| Q |
109 |
accacactttttcgtatcat |
128 |
Q |
| |
|
|||||| |||||| |||||| |
|
|
| T |
42566533 |
accacaatttttcatatcat |
42566552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 339 - 440
Target Start/End: Original strand, 42566560 - 42566668
Alignment:
| Q |
339 |
cttgttcgcgaaactgctaaagctgcatgagtaggtcctaagtgcaactgatac-------tactttttctggttttatggtagtgagaatgttgtactg |
431 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42566560 |
cttgttcgcgacactgctaaagctgcatgagtaggtcctaagtgcaactgatacacatcattactttttctggttttatggtagtgagaatgttgtactg |
42566659 |
T |
|
| Q |
432 |
atgaaacat |
440 |
Q |
| |
|
||||||||| |
|
|
| T |
42566660 |
atgaaacat |
42566668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University