View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_low_20 (Length: 444)

Name: NF18757_low_20
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_low_20
NF18757_low_20
[»] chr4 (4 HSPs)
chr4 (50-281)||(9935069-9935301)
chr4 (308-440)||(9934941-9935073)
chr4 (20-89)||(9935346-9935415)
chr4 (50-89)||(9935304-9935343)
[»] chr7 (3 HSPs)
chr7 (323-393)||(30918255-30918326)
chr7 (340-419)||(30926583-30926663)
chr7 (323-443)||(26028310-26028432)
[»] chr3 (1 HSPs)
chr3 (323-435)||(11602986-11603099)
[»] chr6 (1 HSPs)
chr6 (110-175)||(8335490-8335554)
[»] chr2 (1 HSPs)
chr2 (338-435)||(15434513-15434612)
[»] chr5 (2 HSPs)
chr5 (309-429)||(963152-963274)
chr5 (335-403)||(14214402-14214472)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 281
Target Start/End: Complemental strand, 9935301 - 9935069
Alignment:
Q  50 tggttagtccaataatgtgttggaacattattcacgtttatggcaccctaatgtgtaaggtgagtcgataaccattgaaggttttaaagaacaccaaatt 149  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9935301 tggttagaccaataatgtgttggaacattattcacgtttacggcaccctaatgtgtaaggtgagtcgataaccattgaaggttttaaagaacaccaaatt 9935202  T
Q  150 atcatcacaaagcattaatagaatattcccaaagcttataaaggttttatcggttgaattaagttgagccataaagatatgtttagtagtcatgagag-- 247  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||      
T  9935201 atcatcacaaagcattaatagaatattcctaaagcttataaagg-tttatcggttgaattaagttgagccataacgatatggttagtagtcatgagagat 9935103  T
Q  248 acagatcgatttatgagcattcataaatgcataa 281  Q
    | ||||||| ||||||||||||||||||||||||    
T  9935102 atagatcgacttatgagcattcataaatgcataa 9935069  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 308 - 440
Target Start/End: Complemental strand, 9935073 - 9934941
Alignment:
Q  308 cataaaaatatgaatgataaatttaaccgaataaaatcaaagcaatcaactatattcaaaggataataagttacatgatcaaacaattattgagaaattc 407  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  9935073 cataaaaacatgaatgataaatttaaccgaaaaaaatcaaagaaatcaactgtattcaaaggataataagttacatgatcaaacagttatagagaaattc 9934974  T
Q  408 ctcctttatgacttaacttagagaattatctac 440  Q
    ||||||||||||||||| |||||||||| ||||    
T  9934973 ctcctttatgacttaacctagagaattagctac 9934941  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 9935415 - 9935346
Alignment:
Q  20 gtcatgtcagattcccttctctgaattatttggttagtccaataatgtgttggaacattattcacgttta 89  Q
    ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9935415 gtcatgttagatttccttccctgaattatttggttagaccaataatgtgttggaacattattcacgttta 9935346  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 9935343 - 9935304
Alignment:
Q  50 tggttagtccaataatgtgttggaacattattcacgttta 89  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  9935343 tggttagaccaataatgtgttggaacattattcacgttta 9935304  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 30918255 - 30918326
Alignment:
Q  323 gataaatttaaccgaataaaatcaaagcaatcaactatattcaaaggataat-aagttacatgatcaaacaa 393  Q
    ||||| |||| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||    
T  30918255 gataactttatccgaataaaatcaaagcaatcaaatgtattcaaaggataataaagttacatgatcaaacaa 30918326  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 30926583 - 30926663
Alignment:
Q  340 aaaatcaaagcaatcaactatattcaaaggataataa-gttacatgatcaaacaattattgagaaattcctcctttatgac 419  Q
    |||||||||||||| || | |||| |||||||||||| |||||||||| |||||||||| ||||| ||| ||||| |||||    
T  30926583 aaaatcaaagcaataaaatgtattaaaaggataataaagttacatgattaaacaattatagagaagttcatccttcatgac 30926663  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 443
Target Start/End: Original strand, 26028310 - 26028432
Alignment:
Q  323 gataaatttaaccgaataaaatcaaagcaatcaactatattcaaagg--ataataagttacatgatcaaacaattattgagaaattcctcctttatgact 420  Q
    ||||||||||| |||||||||||| ||||||| | | |||||||  |  || | |||||||||||||||||||||   ||||| ||||||||| ||||      
T  26028310 gataaatttaatcgaataaaatcagagcaatcgattgtattcaagagacattaaaagttacatgatcaaacaatttaagagaagttcctccttcatgatc 26028409  T
Q  421 taacttagagaattatctaccca 443  Q
    ||||||| | ||||| |||||||    
T  26028410 taacttaaaaaattaactaccca 26028432  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 435
Target Start/End: Complemental strand, 11603099 - 11602986
Alignment:
Q  323 gataaatttaaccgaataaaatcaaagcaatcaactatattcaaaggataataa--gttacatgatcaaacaattattgagaaattcctcctttatgact 420  Q
    ||||||||||||| |||||||||||  ||||||||  |||||||||||||||||  ||||||||||||||||||||   |||| || |||||| |||||     
T  11603099 gataaatttaacc-aataaaatcaagacaatcaacggtattcaaaggataataaatgttacatgatcaaacaattacaaagaagtttctccttcatgacc 11603001  T
Q  421 taacttagagaatta 435  Q
    |||| ||||||||||    
T  11603000 taacctagagaatta 11602986  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 8335490 - 8335554
Alignment:
Q  110 tgagtcgataaccattgaaggttttaaagaacaccaaattatcatcacaaagcattaatagaatat 175  Q
    |||||| |||||||||| |||||| || |||||||||||| |  ||||||||||||||||||||||    
T  8335490 tgagtctataaccattgcaggtttgaatgaacaccaaatt-ttgtcacaaagcattaatagaatat 8335554  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 15434513 - 15434612
Alignment:
Q  338 ataaaatcaaagcaatcaactatattcaaaggataat--aagttacatgatcaaacaattattgagaaattcctcctttatgacttaacttagagaatta 435  Q
    ||||| |||| ||||| |||| ||||||||||| |||  |||||||||||| ||||||||   ||| | || |||||| |||||||||| ||||||||||    
T  15434513 ataaagtcaaggcaattaactgtattcaaaggacaatagaagttacatgataaaacaattccagaggagttgctccttcatgacttaacctagagaatta 15434612  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 963152 - 963274
Alignment:
Q  309 ataaaaatatgaatgataaatttaaccgaataaaatcaaagcaatcaactatattcaaaggata--ataagttacatgatcaaacaattattgagaaatt 406  Q
    ||||||| || || ||| ||||| || ||||||||||||||||||||||  | ||||| |||||  | ||||||||   ||||||| |||| || |||||    
T  963152 ataaaaacattaaggattaattttactgaataaaatcaaagcaatcaaccgttttcaatggatattaaaagttacaaagtcaaacagttatagaaaaatt 963251  T
Q  407 cctcctttatgacttaacttaga 429  Q
    ||||||| ||||| |||| ||||    
T  963252 cctccttcatgacctaacctaga 963274  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 14214402 - 14214472
Alignment:
Q  335 cgaataaaatcaaagcaatcaactatattcaaaggata--ataagttacatgatcaaacaattattgagaa 403  Q
    |||||||||| |||||||| || | |||||||||||||  | ||||||||||||| ||||||||| |||||    
T  14214402 cgaataaaatgaaagcaataaattgtattcaaaggatattaaaagttacatgatccaacaattatagagaa 14214472  T

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