View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_22 (Length: 415)
Name: NF18757_low_22
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 399
Target Start/End: Complemental strand, 42124093 - 42123704
Alignment:
| Q |
10 |
catcatcagctccattacctgaaaaagaaccattgctgaaaaagaaagcgacaccagcattaacattgacaagaacatggtatcaaacattctcagcact |
109 |
Q |
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| T |
42124093 |
catcatcagctccattacctgaaaaagaaccattgctgaaaaagaaagcgacaccagcattaacattgacaagaacatggtatcaaacattctcagcact |
42123994 |
T |
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| Q |
110 |
cttcattcagccattactacaaactattttacctcacatggtaattggtttagctgcttttgttcctctaaacatggttgtttattttaaggatgtcaaa |
209 |
Q |
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| T |
42123993 |
cttcattcagccattactacaaactattttacctcacatggtaattggtttagctgcttttgttcctctaaacatggttgtttattttaaggatgtcaaa |
42123894 |
T |
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| Q |
210 |
aaacttccactccattggttacttccattcttttggattctctcaggttttatagctgcattatcatgtgttatagccaaaagggtacttgtaggaaaaa |
309 |
Q |
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| T |
42123893 |
aaacttccactccattggttacttccattcttttggattctctcaggttttatagctgcattatcatgtgttatagccaaaagggtacttgtaggaaaaa |
42123794 |
T |
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| Q |
310 |
ggaaacttggtgaaacaataccaatatggagtnnnnnnnttgtctttgatagcacatggcaagctataagaacattggttggtgattact |
399 |
Q |
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| T |
42123793 |
ggaaacttggtgaaacaataccaatatggagtaaaaaaattgtctttgatagcacatggcaagctataagaacattggttggtgattact |
42123704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 24928470 - 24928409
Alignment:
| Q |
72 |
acattgacaagaacatggtatcaaacattctcagcactcttcattcagccattactacaaac |
133 |
Q |
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| T |
24928470 |
acattaacaagaaaatggtatcaaaccttctcatcactcttcattcagccatttctacaaac |
24928409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 24928310 - 24928247
Alignment:
| Q |
232 |
ttccattcttttggattctctcaggttttatagctgcattatcatgtgttatagccaaaagggt |
295 |
Q |
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||||||| |||||||||||||||||| || |||||||||| | |||||||||||||||| |||| |
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| T |
24928310 |
ttccattgttttggattctctcaggtgttttagctgcattgttatgtgttatagccaaatgggt |
24928247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 24928190 - 24928157
Alignment:
| Q |
352 |
tctttgatagcacatggcaagctataagaacatt |
385 |
Q |
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| T |
24928190 |
tctttgatagtacatggcaagctataagaacatt |
24928157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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