View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18757_low_23 (Length: 414)
Name: NF18757_low_23
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18757_low_23 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 2483479 - 2483870
Alignment:
| Q |
9 |
caagaatatgatgaaataagtctttaaaataatggtttaaggacaaacttttttgcaataaataactcctcaaaactgtcttctcttcacttttatttag |
108 |
Q |
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| T |
2483479 |
caagaaaatgatgaaataagtctttaaaataatggtttaaggacaaacttttttgcaataaataactcctcaaatctgtcttctcttcacttttatttag |
2483578 |
T |
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| Q |
109 |
ataataaagtcttggacttaactattgatattctatgaaatcctaacataggttgttcttattctatttttctttattttatatctgtacgtatttgtat |
208 |
Q |
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| T |
2483579 |
ataataaagtcttggacttaactattgatattctatgaaaccct----------gttcttattctatttttctttattttatatctgta----tttgtat |
2483664 |
T |
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| Q |
209 |
tgttaacatggtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgttttaggtttgtctttt |
308 |
Q |
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| T |
2483665 |
tgttaacatggtatcaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttttggtttgtctttt |
2483764 |
T |
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| Q |
309 |
gaatattcgttatattgatagtgatttggttttcttaatttgttattttggttttcttagtttgttaaaaatattcagaggcattacaaattgattattg |
408 |
Q |
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| T |
2483765 |
gaatattcgttatattgatagtgatttggttttcttaatttgttattttggttttcttagtttgttaaaaatcttcagaggcattacaacttgattattg |
2483864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 361
Target Start/End: Original strand, 2479191 - 2479359
Alignment:
| Q |
199 |
gtatttgtattgttaacatggtatgaagagcatggttcgatccgctt--gaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttta |
296 |
Q |
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| T |
2479191 |
gtatatgtgttgttaacattgtatgaagagcatggtttgatcctcttttgaaccactaatcgtttccaccgtcgaattccaaaagcttgggattgttttt |
2479290 |
T |
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| Q |
297 |
ggtttgtcttttgaatattcgt----tatattgatagtgatttggttttcttaatttgttattttggtt |
361 |
Q |
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| T |
2479291 |
ggtttgtcttttgaatattcgttatatatattgatagtgatttagttctcttgatttgttatgttggtt |
2479359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 1175506 - 1175437
Alignment:
| Q |
219 |
gtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttggga |
288 |
Q |
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| T |
1175506 |
gtatcaagagtatggtttgatcgtcttgaaccactagtcgcttccgctgtcgaatcccaaaagtttggga |
1175437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 357
Target Start/End: Complemental strand, 3775795 - 3775671
Alignment:
| Q |
234 |
ttcgatccgc-ttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtga |
332 |
Q |
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| T |
3775795 |
ttcgatccgccttgaaccacttgtcgcttctgttatcgatttcaaaaagtttgggattgtgtttgatttgccttttgaagattgattatattaatcatga |
3775696 |
T |
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| Q |
333 |
tttggttttcttaatttgttatttt |
357 |
Q |
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| T |
3775695 |
tttggttctcccaacttgttatttt |
3775671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 24135082 - 24135127
Alignment:
| Q |
200 |
tatttgtattgttaacatggtatgaagagcatggttcgatccgctt |
245 |
Q |
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| T |
24135082 |
tatttgtattgttaagatggtatcaagagcgtggtttgatccgctt |
24135127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 3950617 - 3950697
Alignment:
| Q |
206 |
tattgttaacatggtatgaagagcatggttcgatccg-cttgaaccactaatcgcttctgccgtcgaattccaaaagtttg |
285 |
Q |
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| T |
3950617 |
tattgttaacatggtatcgaaagcatggtttgatccgccttgaaccacttgtcacttctgctatcgaatctcaaaagtttg |
3950697 |
T |
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