View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18757_low_29 (Length: 379)

Name: NF18757_low_29
Description: NF18757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18757_low_29
NF18757_low_29
[»] chr7 (1 HSPs)
chr7 (3-132)||(43103836-43103965)
[»] chr5 (3 HSPs)
chr5 (3-132)||(27364598-27364726)
chr5 (95-132)||(27365640-27365677)
chr5 (95-132)||(22778251-22778288)
[»] chr4 (1 HSPs)
chr4 (18-132)||(1866168-1866282)
[»] chr1 (5 HSPs)
chr1 (18-132)||(10920063-10920177)
chr1 (18-132)||(23818199-23818313)
chr1 (39-125)||(16145326-16145412)
chr1 (96-134)||(28762445-28762483)
chr1 (95-132)||(4929814-4929851)
[»] chr6 (2 HSPs)
chr6 (12-74)||(2127735-2127797)
chr6 (95-132)||(1859798-1859835)
[»] chr2 (2 HSPs)
chr2 (84-132)||(3322916-3322964)
chr2 (95-132)||(13913466-13913503)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 43103965 - 43103836
Alignment:
Q  3 tggagtagcaaaggcaatcaggtagtcatacaccacattaagtgaaatatcatctccaccttttaatttgatcttagggtcctaatttaatgctctcatc 102  Q
    ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  43103965 tggagaaggaaaggcaatcaggtagtcatacaccacattacgtgaaatatcatctccacctttcaatttgatcctagggtcctaatttaatgctctcatc 43103866  T
Q  103 tttcattataaaatgtcctctcacttgata 132  Q
    | ||||||||||||||||||||||||||||    
T  43103865 tctcattataaaatgtcctctcacttgata 43103836  T

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Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 27364726 - 27364598
Alignment:
Q  3 tggagtagcaaaggcaatcaggtagtcatacaccacattaagtgaaatatcatctccaccttttaatttgatcttagggtcctaatttaatgctctcatc 102  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  27364726 tggagaaggaaaggcaatcaggtagtcatacaccacattaagtgaaatatcatctccacctttcaatttga-cctagggtcctaatttaatgctctcatc 27364628  T
Q  103 tttcattataaaatgtcctctcacttgata 132  Q
    | |||||||||||||| |||||||||||||    
T  27364627 tctcattataaaatgtactctcacttgata 27364598  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 27365640 - 27365677
Alignment:
Q  95 ctctcatctttcattataaaatgtcctctcacttgata 132  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  27365640 ctctcatctctcattataaaatgtcctctcacttgata 27365677  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 22778288 - 22778251
Alignment:
Q  95 ctctcatctttcattataaaatgtcctctcacttgata 132  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  22778288 ctctcatctctcattataagatgtcctctcacttgata 22778251  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 1866168 - 1866282
Alignment:
Q  18 aatcaggtagtcatacaccacattaagtgaaatatcatctccaccttttaatttgatcttagggtcctaatttaatgctctcatctttcattataaaatg 117  Q
    ||||||||||||| || |||||||||||| ||||||||||||||| || | ||||||| || |||||||||| ||||||||||||| |||||||||||||    
T  1866168 aatcaggtagtcacaccccacattaagtgtaatatcatctccaccgttcagtttgatcctacggtcctaattcaatgctctcatctctcattataaaatg 1866267  T
Q  118 tcctctcacttgata 132  Q
    |||||||||||||||    
T  1866268 tcctctcacttgata 1866282  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 10920063 - 10920177
Alignment:
Q  18 aatcaggtagtcatacaccacattaagtgaaatatcatctccaccttttaatttgatcttagggtcctaatttaatgctctcatctttcattataaaatg 117  Q
    ||||||||||||| || |||||||||||| ||||||||||||||| || | ||||||| || |||||||||| ||||||||||||| |||||||||||||    
T  10920063 aatcaggtagtcacaccccacattaagtgtaatatcatctccaccgttcagtttgatcctacggtcctaattcaatgctctcatctctcattataaaatg 10920162  T
Q  118 tcctctcacttgata 132  Q
    |||||||||||||||    
T  10920163 tcctctcacttgata 10920177  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 23818199 - 23818313
Alignment:
Q  18 aatcaggtagtcatacaccacattaagtgaaatatcatctccaccttttaatttgatcttagggtcctaatttaatgctctcatctttcattataaaatg 117  Q
    ||||||||||||| || |||||||||||| ||||||||||||||| || | ||||||| || |||||||||| ||||||||||||| ||||||||||||     
T  23818199 aatcaggtagtcacaccccacattaagtgtaatatcatctccaccgttcagtttgatcctacggtcctaattcaatgctctcatctctcattataaaata 23818298  T
Q  118 tcctctcacttgata 132  Q
    |||||||||||||||    
T  23818299 tcctctcacttgata 23818313  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 16145412 - 16145326
Alignment:
Q  39 attaagtgaaatatcatctccaccttttaatttgatcttagggtcctaatttaatgctctcatctttcattataaaatgtcctctca 125  Q
    |||||||||||||||||||||||| || |  || |||||||||| |||| ||||||||||||||| | |||||||||  ||||||||    
T  16145412 attaagtgaaatatcatctccaccattcagattaatcttagggtgctaacttaatgctctcatctcttattataaaacctcctctca 16145326  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 28762483 - 28762445
Alignment:
Q  96 tctcatctttcattataaaatgtcctctcacttgataga 134  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  28762483 tctcatctctcattctaaaatgtcctctcacttgataga 28762445  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 4929851 - 4929814
Alignment:
Q  95 ctctcatctttcattataaaatgtcctctcacttgata 132  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  4929851 ctctcatctctcattataagatgtcctctcacttgata 4929814  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 2127735 - 2127797
Alignment:
Q  12 aaaggcaatcaggtagtcatacaccacattaagtgaaatatcatctccaccttttaatttgat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  2127735 aaaggcaatcaggtagtcatacaccacattaagtgaaatatcatcttcacatttcaatttgat 2127797  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 1859798 - 1859835
Alignment:
Q  95 ctctcatctttcattataaaatgtcctctcacttgata 132  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  1859798 ctctcatctctcattttaaaatgtcctctcacttgata 1859835  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 3322964 - 3322916
Alignment:
Q  84 ctaatttaatgctctcatctttcattataaaatgtcctctcacttgata 132  Q
    |||||||||  ||||||||| ||||| ||||||||||||||||||||||    
T  3322964 ctaatttaactctctcatctctcattttaaaatgtcctctcacttgata 3322916  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 13913466 - 13913503
Alignment:
Q  95 ctctcatctttcattataaaatgtcctctcacttgata 132  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  13913466 ctctcatctctcattataagatgtcctctcacttgata 13913503  T

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